[BioC] packages for hugene10st

[James W. MacDonald]

Hi Mayte,

http://www.bioconductor.org/docs/workflows/oligoarrays/

Best,

Jim



Mayte Suarez-Farinas wrote:
> Hi all
> 
> I am working with affy's human GeneSete 1.0 ST. I download  
> hugene10st.db annotation database but
> that was the only package I found. When I try to do rma or gcmra it  
> gives me teh following error.
> So it is looking for the CDF environment for this chip. Aren't those  
> ready yet??
> any help will be appreciated.
> Tx, mayte
> 
> 
> Warning: unable to access index for repository http:// 
> brainarray.mbni.med.umich.edu/bioc/bin/macosx/universal/contrib/2.8
> Error in getCdfInfo(object) :
>    Could not obtain CDF environment, problems encountered:
> Specified environment does not contain HuGene-1_0-st-v1
> Library - package hugene10stv1cdf not installed
> Bioconductor - hugene10stv1cdf not available
> 
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826