[BioC] From eSet to AffyBatch Object
Boris Umylny
umylny at apbri.org
Tue Mar 3 05:50:20 CET 2009
Hi,
I am working with affy library from Bioconductor 2.3.
The library contains functions (hist, image and boxplot) that work directly on
AffyBatch object, but apparently not on ExpressionSet/eSet object. After I
use rma, expresso or mas5 to do background correction and normalization I get
an eSet object, which appears to be incompatible with these functions. If I
call hist(exprs(e)), where e is an ExpressionSet object, I get a plot of the
first array only.
Is there a Bioconductor library (other than geneplotter which apparently does
not) that provides these functions on eSet/ExpressionSet object?
Is there a way to get an AffyBatch object from eSet object to make use of
these functions?
Thank you in advance for your help.
Sincerely,
Boris Umylny
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