[BioC] Cloud Plotting? flowViz/Core

Aric Gregson a.gregson at ucla.edu
Fri Mar 6 21:35:54 CET 2009


Hello, 

There does not appear to be any implementation of the corresponding
cloud plot from lattice in flowViz, is that correct? Would it be
possible or is it planned to implement it? 

Also, this may be a sort of bug, not sure. Not a big deal, as no one
uses plot(), but still this does not follow the most recent flowCore
pamphlet.

plot(Data(wf[["asinh"]]),"SSC.A")
For plotting, please attach the 'flowViz' package.
   i.e., 'library(flowViz)'

> sessionInfo()
R version 2.8.0 (2008-10-20) 
i386-pc-solaris2.11 

locale:
C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets
methods [8] base     

other attached packages:
[1] flowViz_1.7.10   lattice_0.17-15  flowCore_1.9.18  rrcov_0.4-07    
[5] robustbase_0.4-3 Biobase_2.2.1   

loaded via a namespace (and not attached):
 [1] AnnotationDbi_1.4.1 DBI_0.2-4           KernSmooth_2.22-22 
 [4] MASS_7.2-44         RColorBrewer_1.0-2  RSQLite_0.7-1      
 [7] cluster_1.11.11     feature_1.1-14      geneplotter_1.20.0 
[10] graph_1.20.0        grid_2.8.0          latticeExtra_0.5-4 
[13] stats4_2.8.0        tcltk_2.8.0        

Thanks, 

Aric
-- 
Aric Gregson <a.gregson at ucla.edu>



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