December 2007 Archives by thread

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Starting: Sat Dec 1 02:35:38 CET 2007
Ending: Mon Dec 31 21:58:28 CET 2007
Messages: 310

• [BioC] Limma: doing multiple paired t-tests in one go...   Gordon Smyth
• [BioC] PCA methods for probe level data   James W. MacDonald
• [BioC] Limma - error reading in .gpr files   michael watson (IAH-C)
  • [BioC] errors with imageplot3by2   alison waller
    • [BioC] errors with imageplot3by2   Sean Davis
      • [BioC] errors with imageplot3by2   alison waller
      • [BioC] errors with imageplot3by2   Sean Davis
• [BioC] some microscope bridge, but carrot sex   Hannah Mccray
• [BioC] GO graph plotting with some in color   Loren Engrav
• [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Guiyuan Lei
  • [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Marc Carlson
    • [BioC] Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip   Guiyuan Lei
• [BioC] microarray hybridization   McCall, Matthew N.
• [BioC] pairs(): different ylim , xlim for upper.panel and lower.panel?   Stefan Thomsen
  • [BioC] pairs(): different ylim , xlim for upper.panel and lower.panel?   Wolfgang Huber
• [BioC] Applying separate normalization methods to replicate arrays   Seungwoo Hwang
  • [BioC] Applying separate normalization methods to replicate arrays   Sean Davis
• [BioC] RWebServices problems reported by the "Multiple platform build/check report" for BioC 2.1   BBS-noreply at bioconductor.org
• [BioC] Expanding table to all possible factors   Daniel Brewer
  • [BioC] Expanding table to all possible factors   alex lam (RI)
• [BioC] question on lars package   James Anderson
• [BioC] exonmap questions   Jianping Jin
  • [BioC] exonmap questions   James W. MacDonald
    • [BioC] exonmap questions   Jianping Jin
• [BioC] FIESTA viewer: another issue with input files (corrected)   Juan C Oliveros Collazos
• [BioC] BIRD 2008 Call for workshop proposals   Prof. Roland Wagner
• [BioC] MICROARRAYS IN R COURSE at Imperial College Dec 2007   North, Bernard V
• [BioC] How to read a data.frame into limma or marray   Wolfgang Raffelsberger
  • [BioC] How to read a data.frame into limma or marray   Saroj Mohapatra
• [BioC] GO   Salim Charaniya
  • [BioC] GO   Marc Carlson
• [BioC] GSEA and Broad gene sets   Brian_Hare at vrtx.com
  • [BioC] GSEA and Broad gene sets   Hassane, Duane
    • [BioC] GSEA and Broad gene sets   Martin Morgan
  • [BioC] GSEA and Broad gene sets   Weiwei Shi
    • [BioC] GSEA and Broad gene sets   Robert Gentleman
      • [BioC] GSEA and Broad gene sets   Weiwei Shi
• [BioC] SpotTypes in Limma   Yong Yin
• [BioC] 10K, 5.0 and 6.0 SNP array analysis with oligo   Melanie Bahlo
• [BioC] Limma - error with SpotTypes   alison waller
• [BioC] R-BioC rpm package   D.Enrique ESCOBAR ESPINOZA
  • [BioC] [Fedora-r-devel-list] R-BioC rpm package   Tom "spot" Callaway
    • [BioC] [Fedora-r-devel-list] R-BioC rpm package   pingou
  • [BioC] R-BioC rpm package   oscar
    • [BioC] R-BioC rpm package   Herve Pages
• [BioC] CDF file   Jay an
• [BioC] Specifying wells in normalization for cellHTS2   Steve Taylor
  • [BioC] Specifying wells in normalization for cellHTS2   ligia at ebi.ac.uk
• [BioC] CDF file   Celine Carret
  • [BioC] CDF file   Michal Okoniewski
• [BioC] New version of BeadStudio - new Illumina data files   Ingrid H. G. Østensen
  • [BioC] New version of BeadStudio - new Illumina data files   Lynn Amon
    • [BioC] New version of BeadStudio - new Illumina data files   Ingrid H. G. Østensen
• [BioC] Course***January 2008 *** San Francisco & New York City *** R/S-Plus Advanced Programming by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] install local .gz package in windows   Jay an
  • [BioC] install local .gz package in windows   Kasper Daniel Hansen
    • [BioC] install local .gz package in windows   Martin Morgan
• [BioC] biocLite to install a local binary sourced package for mac   Weiwei Shi
  • [BioC] biocLite to install a local binary sourced package for mac   Martin Morgan
  • [BioC] biocLite to install a local binary sourced package for mac   James W. MacDonald
  • [BioC] biocLite to install a local binary sourced package for mac   lgautier at altern.org
• [BioC] Z factor and Z' factor   Steve Taylor
  • [BioC] Z factor and Z' factor   ligia at ebi.ac.uk
• [BioC] New version of BeadStudio - new Illumina data files   Pan Du
• [BioC] package to analize vcn data   Glazko, Galina
  • [BioC] package to analize vcn data   James W. MacDonald
• [BioC] Wow, what have I done   Loren Engrav
  • [BioC] Wow, what have I done   Benilton Carvalho
    • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Benilton Carvalho
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Tony Chiang
      • [BioC] Wow, what have I done   Sean Davis
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Sean Davis
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Sean Davis
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Marcus G. Daniels
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Kasper Daniel Hansen
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Kasper Daniel Hansen
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Herve Pages
      • [BioC] Wow, what have I done   Kasper Daniel Hansen
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Ben Bolstad
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Ben Bolstad
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   Kasper Daniel Hansen
      • [BioC] Wow, what have I done   Loren Engrav
      • [BioC] Wow, what have I done   cstrato
  • [BioC] Wow, what have I done   Marcus G. Daniels
    • [BioC] Wow, what have I done   Loren Engrav
• [BioC] Have the honey   Althea
• [BioC] about microarray batch effect and treatment effect   James Anderson
  • [BioC] about microarray batch effect and treatment effect   Sean Davis
    • [BioC] about microarray batch effect and treatment effect   James Anderson
      • [BioC] about microarray batch effect and treatment effect   Sean Davis
• [BioC] How to retrieve environment variables from custom build annotation packages   Chanchal Kumar
  • [BioC] How to retrieve environment variables from custom build annotation packages   Wolfgang Huber
    • [BioC] How to retrieve environment variables from custom build annotation packages   Chanchal Kumar
• [BioC] association of clinical phenotype to sequence data   Ian Cheeseman
  • [BioC] association of clinical phenotype to sequence data   Wolfgang Huber
• [BioC] Error using ABarray   Ingrid H. G. Østensen
  • [BioC] Error using ABarray   Martin Morgan
• [BioC] go determine   reader
• [BioC] do unlawful   Felecia
• [BioC] how to color a dendrogram?   carol white
  • [BioC] how to color a dendrogram?   Thomas Girke
• [BioC] how to color a dendrogram?   carol white
• [BioC] Dividing an ExpressionSet   Ingrid H. G. Østensen
  • [BioC] Dividing an ExpressionSet   Sean Davis
• [BioC] Mann Whitney   Patricia Garcia
  • [BioC] Mann Whitney   Sean Davis
  • [BioC] Mann Whitney   Caroline Lemerle
  • [BioC] Mann Whitney   Naomi Altman
• [BioC] Affy Tiling Array & Oligo   joseph
  • [BioC] Affy Tiling Array & Oligo   Naira Naouar
• [BioC] siggenes fc threshold   John Lande
  • [BioC] siggenes fc threshold   Holger Schwender
    • [BioC] siggenes fc threshold   John Lande
      • [BioC] siggenes fc threshold   James W. MacDonald
• [BioC] Ubuntu Rgraphviz gotcha   IAIN GALLAGHER
  • [BioC] Ubuntu Rgraphviz gotcha   Li Long
  • [BioC] Ubuntu Rgraphviz gotcha   Herve Pages
• [BioC] Fwd: Wow, what have I done   Sean Davis
  • [BioC] Fwd: Wow, what have I done   Loren Engrav
    • [BioC] Fwd: Wow, what have I done   Herve Pages
      • [BioC] Fwd: Wow, what have I done   Loren Engrav
      • [BioC] Fwd: Wow, what have I done   Loren Engrav
    • [BioC] Fwd: Wow, what have I done   Kasper Daniel Hansen
• [BioC] Take part iin this employment process   Geoffrey Downs
• [BioC] GEOquery downloading problems   Bruce Tabor
  • [BioC] GEOquery downloading problems   Sean Davis
    • [BioC] GEOquery downloading problems   michael watson (IAH-C)
• [BioC] Wir suchen neue Kooperationspartnern oder Partner.   Wir suchen neue Kooperationspartnern oder Partner.
• [BioC] Affy Tiling arrays & oligo   joseph
  • [BioC] Affy Tiling arrays & oligo   Benilton Carvalho
• [BioC] Affy Tiling arrays & oligo   joseph
  • [BioC] Affy Tiling arrays & oligo   James W. MacDonald
    • [BioC] Affy Tiling arrays & oligo   Henrik Bengtsson
• [BioC] Combine frame into one with special characteristics   Paul Christoph Schröder
• [BioC] justMAS function not found   James Anderson
  • [BioC] justMAS function not found   Robert Gentleman
  • [BioC] justMAS function not found   Herve Pages
• [BioC] Extracting dendogram information from Heatmaps   alison waller
  • [BioC] Extracting dendogram information from Heatmaps   James W. MacDonald
    • [BioC] Extracting dendogram information from Heatmaps   Michael Dondrup
    • [BioC] Extracting dendogram information from Heatmaps   Thomas Girke
      • [BioC] Extracting dendogram information from Heatmaps   alison waller
      • [BioC] Extracting dendogram information from Heatmaps   'Thomas Girke'
      • [BioC] Extracting dendogram information from Heatmaps   alison waller
      • [BioC] Extracting dendogram information from Heatmaps   'Thomas Girke'
      • [BioC] Extracting dendogram information from Heatmaps   alison waller
      • [BioC] Extracting dendogram information from Heatmaps   James W. MacDonald
      • [BioC] Extracting dendogram information from Heatmaps   alison waller
• [BioC] Question to RankProd package   qinghua xu
  • [BioC] Question to RankProd package   Weiwei Shi
• [BioC] how to analyse a matrix of genes vs samples with limma   Federico Abascal
  • [BioC] how to analyse a matrix of genes vs samples with limma   Ido M. Tamir
• [BioC] Gene Definition to GI   Srinivasan Ramachandran
  • [BioC] Gene Definition to GI   Marc Carlson
    • [BioC] Gene Definition to GI   Srinivasan Ramachandran
      • [BioC] Gene Definition to GI   Sean Davis
• [BioC] Affy Tiling Array & Oligo   Naira Naouar
• [BioC] p-value output from MTP (multtest) into scientific notations   Boel Brynedal
• [BioC] error using pdInfoBuilder on Affymetrix snp 5.0 array   Sergii Ivakhno
  • [BioC] error using pdInfoBuilder on Affymetrix snp 5.0 array   James W. MacDonald
    • [BioC] error using pdInfoBuilder on Affymetrix snp 5.0 array   Benilton Carvalho
    • [BioC] error using pdInfoBuilder on Affymetrix snp 5.0 array   Henrik Bengtsson
      • [BioC] error using pdInfoBuilder on Affymetrix snp 5.0 array   Sergii Ivakhno
• [BioC] Affy Human Gene ST1.0 cdf?   Michal Blazejczyk
  • [BioC] Affy Human Gene ST1.0 cdf?   James W. MacDonald
• [BioC] Error in GCRMA package   H Parikh
  • [BioC] Error in GCRMA package   Hooiveld, Guido
    • [BioC] Error in GCRMA package   Hooiveld, Guido
• [BioC] filtering on variance   Dennis.Burian at faa.gov
• [BioC] Biobase ExpressionSet: metadata on assayData   Eric Lecoutre
  • [BioC] Biobase ExpressionSet: metadata on assayData   Martin Morgan
  • [BioC] Biobase ExpressionSet: metadata on assayData   Eric Lecoutre
    • [BioC] Biobase ExpressionSet: metadata on assayData   Martin Morgan
      • [BioC] Biobase ExpressionSet: metadata on assayData   Eric Lecoutre
• [BioC] About subsampling of VST in lumi   Pan Du
  • [BioC] About subsampling of VST in lumi   ligia at ebi.ac.uk
    • [BioC] About subsampling of VST in lumi   Pan Du
• [BioC] Tcl/Tk issues - Mac OS 10.5 / Cannot start affylmGUI   Sam Volchenboum
• [BioC] difference between illuminaHumanv1 and lumiHumanV1   burak kutlu
  • [BioC] difference between illuminaHumanv1 and lumiHumanV1   Lynn Amon
  • [BioC] difference between illuminaHumanv1 and lumiHumanV1   Wolfgang Huber
• [BioC] To in fraction   Arron F. Murillo
• [BioC] bini sickroom   VCory YPosey
• [BioC] BIRD 2008 Conference   Prof. Roland Wagner
• [BioC] BIRD 2008   Prof. Roland Wagner
• [BioC] BIRD 2008 Conference Call for papers   Prof. Roland Wagner
• [BioC] Or on except   said do
• [BioC] small sample RMA??   Marco Fabbri
• [BioC] dreamed scriptural   MLeon DPagan
• [BioC] SSummer Super-JOB   Gonzalo Pelletier
• [BioC] Wannt new PPorshe or BMW?   Marion Moody
  • [BioC] Wannt new PPorshe or BMW?   Loren Engrav
    • [BioC] Wannt new PPorshe or BMW?   J.delasHeras at ed.ac.uk
      • [BioC] Spam on BioC (was Re: Wannt new PPorshe or BMW?)   Atro Tossavainen
      • [BioC] Spam on BioC (was Re: Wannt new PPorshe or BMW?)   Loren Engrav
      • [BioC] Spam on BioC (was Re: Wannt new PPorshe or BMW?)   Herve Pages
      • [BioC] Spam on BioC (was Re: Wannt new PPorshe or BMW?)   Loren Engrav
• [BioC] Second pass at gcrma error   Dave Jacoby
  • [BioC] Second pass at gcrma error   James W. MacDonald
• [BioC] different density   Jakub Mieczkowski
  • [BioC] different density   Sean Davis
    • [BioC] different density   Jakub Mieczkowski
      • [BioC] different density   Naomi Altman
      • [BioC] different density   Henrik Bengtsson
      • [BioC] different density   Naomi Altman
• [BioC] shako seems   Nigel Baca
• [BioC] plate image processing and analysis with R   Christian Landry
  • [BioC] plate image processing and analysis with R   Wolfgang Huber
    • [BioC] plate image processing and analysis with R   J.delasHeras at ed.ac.uk
• [BioC] errors with read.maimages   Ana Conesa
  • [BioC] errors with read.maimages   Martin Morgan
• [BioC] websites shutdown at 2pm   Herve Pages
• [BioC] SAMR (samr.plot)   Aparna Radhakrishnan
• [BioC] arrayQualityMetrics   Al Ivens
  • [BioC] arrayQualityMetrics   audrey
    • [BioC] arrayQualityMetrics   Al Ivens
      • [BioC] arrayQualityMetrics   audrey
• [BioC] Fabrikverkauf & Outletverkauf   Alceo
• [BioC] limma: decideTests   Al Ivens
• [BioC] RBGL function highlyConnSG not recognized   burak kutlu
  • [BioC] RBGL function highlyConnSG not recognized   Tony Chiang
    • [BioC] RBGL function highlyConnSG not recognized   Wolfgang Huber
• [BioC] about microarray batch effect and treatment effect   aedin culhane
• [BioC] Biostatistician & Epidemiologist posting   Turpin, Jennifer
  • [BioC] Biostatistician & Epidemiologist posting   Robert Gentleman
    • [BioC] Biostatistician & Epidemiologist posting   Turpin, Jennifer
      • [BioC] Biostatistician & Epidemiologist posting   Max Kuhn
      • [BioC] Biostatistician & Epidemiologist posting   Wolfgang Huber
• [BioC] installation of affycoretools   James Anderson
  • [BioC] installation of affycoretools   Sean Davis
    • [BioC] installation of affycoretools   James Anderson
      • [BioC] installation of affycoretools   Sean Davis
      • [BioC] installation of affycoretools   James Anderson
      • [BioC] installation of affycoretools   Martin Morgan
      • [BioC] installation of affycoretools   James W. MacDonald
      • [BioC] installation of affycoretools   Kasper Daniel Hansen
  • [BioC] installation of affycoretools   James W. MacDonald
• [BioC] Statistical Analyst Openings at UT M.D. Anderson Cancer Center   caiwei at mdanderson.org
• [BioC] To golden   breeding as
• [BioC] custom subset method / handling columns selection as logic in '...' parameter   Eric Lecoutre
  • [BioC] custom subset method / handling columns selection as logic in '...' parameter   Martin Morgan
• [BioC] Microarray Data Analyst - Open Position   Yasmina.Bauer at Actelion.Com
• [BioC] Cluster stability estimation   qinghua xu
• [BioC] I would like to join the BioConductor mailing list   Sameet Mehta
  • [BioC] I would like to join the BioConductor mailing list   Richard Pearson
• [BioC] asking help for lumi package   fabio manzo
• [BioC] asking help for lumi package   Pan Du
• [BioC] on rocks   verbal of
• [BioC] RBGL function highlyConnSG not recognized   burak kutlu
  • [BioC] RBGL function highlyConnSG not recognized   Robert Gentleman
    • [BioC] RBGL function highlyConnSG not recognized   Wolfgang Huber
• [BioC] To my highway   rendering go
• [BioC] questions on lumi   Pan Du
• [BioC] Affy normalization question   Mark W Kimpel
  • [BioC] Affy normalization question   James W. MacDonald
    • [BioC] Affy normalization question   Mark W Kimpel
      • [BioC] Affy normalization question   James MacDonald
      • [BioC] Affy normalization question   Mark W Kimpel
    • [BioC] Affy normalization question   Loren Engrav
• [BioC] error with biomaRt in mysql mode   Janet Young
  • [BioC] error with biomaRt in mysql mode   James MacDonald
• [BioC] asking help for lumi package (annotation)   Pan Du
• [BioC] chip on chip Ringo   Jinyan Huang
• [BioC] How to retrieve gene information   affy snp
  • [BioC] How to retrieve gene information   toedling at ebi.ac.uk
    • [BioC] How to retrieve gene information   Martin Morgan
      • [BioC] How to retrieve gene information   affy snp
      • [BioC] How to retrieve gene information   Martin Morgan
      • [BioC] How to retrieve gene information   affy snp
      • [BioC] How to retrieve gene information   Martin Morgan
• [BioC] Possible to compare/normalize across different chip versions?   Sam Volchenboum
  • [BioC] Possible to compare/normalize across different chip versions?   Kishor Tappita
• [BioC] RBGL function highlyConnSG not recognized   burak kutlu
• [BioC] Affy Package   Vallejo, Roger
  • [BioC] [R] Affy Package   Robert Gentleman
  • [BioC] [R] Affy Package   Uwe Ligges
    • [BioC] [R] Affy Package   Uwe Ligges
  • [BioC] affy Package   Naomi Altman
• [BioC] nlme package   Vallejo, Roger
• [BioC] How to map KEGG gene IDs to gene names?   Elliot Kleiman
  • [BioC] How to map KEGG gene IDs to gene names?   Martin Morgan
    • [BioC] How to map KEGG gene IDs to gene names?   Martin Morgan
      • [BioC] How to map KEGG gene IDs to gene names?   Elliot Kleiman
      • [BioC] How to map KEGG gene IDs to gene names?   Martin Morgan
• [BioC] affy Package install   Vallejo, Roger
  • [BioC] affy Package install   Benilton Carvalho
  • [BioC] affy Package install   Benilton Carvalho
    • [BioC] affy Package install   Robert Gentleman
  • [BioC] affy Package install   Herve Pages
• [BioC] Inf values using SAM (package=siggenes)   Julian Lee
• [BioC] another quick question about Illumina annotation   Pan Du
• [BioC] Chatting online   Maritza Story
• [BioC] EBImage Problem   Ellul Jason
  • [BioC] EBImage Problem   Henrik Bengtsson
  • [BioC] EBImage Problem   Oleg Sklyar

Last message date: Mon Dec 31 21:58:28 CET 2007
Archived on: Mon Dec 31 21:59:07 CET 2007

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