[BioC] p-value output from MTP (multtest) into scientific notations
Boel Brynedal
Boel.Brynedal at ki.se
Thu Dec 13 11:25:54 CET 2007
Dear List,
I am using the MTP command in the multtest package and have a simple (?)
question. In my output, all (adjusted) p-values smaller than ~0.000979
equals 0. Which means that I have a list of approximately 2000
transcripts with p-value = 0. Is it possible, in the MTP command, to
format the p-values to scientific notations (10 to the power of..)?
Thankful for any suggestions,
Boel
> sessionInfo()
R version 2.6.0 (2007-10-03)
x86_64-unknown-linux-gnu
locale: ...
attached base packages:
[1] grid splines tools stats graphics grDevices utils
[8] datasets methods base
other attached packages:
[1] hgu133plus2_1.16.0 annaffy_1.8.1 KEGG_1.16.1
[4] GO_1.16.0 simpleaffy_2.10.31 genefilter_1.14.1
[7] IDPmisc_0.9.5 lattice_0.16-5 affyPLM_1.12.0
[10] gcrma_2.10.0 matchprobes_1.10.0 affydata_1.11.3
[13] affy_1.16.0 preprocessCore_1.0.0 affyio_1.6.1
[16] multtest_1.18.0 survival_2.32 Biobase_1.16.1
loaded via a namespace (and not attached):
[1] annotate_1.14.1 rcompgen_0.1-15
--~*~**~***~*~***~**~*~--
Boel Brynedal, MSc, PhD student
Karolinska Institutet
Department of Clinical neuroscience
Karolinska University hospital Huddinge
Division of Neurology, R54
141 86 Stockholm
SWEDEN
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