[BioC] questions on lumi

[Pan Du]

Hi Xiaoyue,

You can subset a LumiBatch object in the same way as the matrix. For example
 x.lumi[,2:4] will subset the samples from 2 to 4.
If you want to rename of samples, you can try the command like following:

 sampleNames(x.lumi) <- newNames
All these functions are inherited from ExpressionSet Class.

Tell me if you have any questions


Pan


On 12/21/07 12:19 PM, "Zhao, Xiaoyue" <zhaox at cshl.edu> wrote:

> 
> Hi Pan,
> 
> I'm using your lumi package. Can I ask a few questions?
> 
> How to do MAplot or pair plot only for a subset of arrays? I have a lot of
> arrays in the LumiBatch, and the graph is too small if I plot all the arrays.
> 
> Another question is about the sample ID and label. I want to change the name
> for each array in LumiBatch. How can I do that?
> 
> Thanks a lot!
> Xiaoyue
>