[BioC] EBImage Problem

[Oleg Sklyar]

Hi Jason,

could you please check if the file
C:/PROGRA~1/R/R-26~1.1/library/EBImage/libs/EBImage.dll actually
exists. If so, if paths to imagemagick root and gtk bin and gtk
lib are added to the PATH (default during installation of both
those tools). If yes, try to update EBImage to the latest
version from www.ebi.ac.uk/~osklyar/EBImage -- that is
definitely compiled with R-2.6.x (as I believe you are using a
Windows binary version). Just to test at any time if the package
works, try something like

library(EBImage)
example(watershed)

Kind regards,
Oleg

-- 
Dr. Oleg Sklyar
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge
CB10 1SD
UK

e-mail: osklyar at ebi.ac.uk

> Dear All,
> I receive this message when I attempt to plot an Image using
> aroma.affymetrix.
> The error seems to lie with EBImage.
>
> Both ImageMagick and GTK+ are installed and added to my
> system-wide
> PATH variable.
>
> I am using R version 2.6.1 on windows with EBImage 2.2.0.
>
> Has anyone else seen this error and if so is there a fix?
> Thanks in advance for your help,
>
> Jason
>
>> plotImage(cf)
>
> Loading required package: EBImage
> Error in dyn.load(file, ...) :
>   unable to load shared library
> 'C:/PROGRA~1/R/R-26~1.1/library/EBImage/libs/EBImage.dll':
>   LoadLibrary failure:  The specified procedure could not be
> found.
>
> Error in list("plotImage(cf)" = <environment>,
> "plotImage.AffymetrixCelFile(cf)" = <environment>,  :
>
> [2007-12-31 11:51:20] Exception: Package not loaded: EBImage.
>   at throw(Exception(...))
>   at throw.default("Package not loaded: EBImage.")
>   at throw("Package not loaded: EBImage.")
>   at getImage.AffymetrixCelFile(this, ...)
>   at getImage(this, ...)
>   at plotImage.AffymetrixCelFile(cf)
>   at plotImage(cf)
>
> Jason Ellul
> Junior Bioinformatics Analyst
> Bioinformatics Research Department
>
> Peter MacCallum Cancer Centre
> TEL: +61 3 9656 3676
> FAX: +61 3 9656 1411
> EMAIL: jason.ellul at petermac.org
>
> Address: St Andrew's Place East Melbourne Victoria 3002
> Australia
> Postal Address: Locked Bag No. 1 A'Beckett St., Victoria, 8006,
> Australia
>
>
>
>
> This email (including any attachments) may contain
> confidential and/or legally privileged information and is
> intended only to be read or used by the addressee.  If you
> are not the intended addressee, any use, distribution,
> disclosure or copying of this email is strictly
> prohibited.
> Confidentiality and legal privilege attached to this email
> (including any attachments) are not waived or lost by
> reason of its mistaken delivery to you.
> If you have received this email in error, please delete it
> and notify us immediately by telephone or email.  Peter
> MacCallum Cancer Centre provides no guarantee that this
> transmission is free of virus or that it has not been
> intercepted or altered and will not be liable for any delay
> in its receipt.
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>