[BioC] New version of BeadStudio - new Illumina data files

[Lynn Amon]

Hi Ingrid,
Thanks for letting me know about the change. I will use the most current
identifiers in the next release of the annotation package. I have
already have annotation packages for the probe identifiers. I can put
them on a temporary ftp site if you are interested.
Lynn

Ingrid H. G. Østensen wrote:
> Hi
>
> With the new version of BeadStrudio (v 3.2) a new manifest file has been introduced:  HumanWG-6_V2_0_R1_11223189_A.bgx. If one uses this one the target id is no longer ILMN_”a number” but a mix of gene symbol, other official identifiers and other identifiers. Using the output files made with the new version makes it “impossible” to annotate or GO classify the data using R/BioC, probably because of the change in target id.
>
> Are there any plans of updating the packages that are to be used with Illumina data? 
>
> Does any one have any plans of making annotation files (and similar) that can be used on
> the probe profile files?
>
> Regards,
> Ingrid
>
>
>
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