[BioC] arrayQualityMetrics
Al Ivens
alicat at sanger.ac.uk
Wed Dec 19 09:30:53 CET 2007
Hi,
I have been using arrayQualityMetrics, and find it very useful.
However, to make it even more useful, would it be possible to have
legends for some of the plots, e.g. density/ecdf, RNAdeg incorporated in
the output?
Cheers and thanks,
a
> sessionInfo()
R version 2.6.0 (2007-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
attached base packages:
[1] grid splines tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] arrayQualityMetrics_1.2.0 latticeExtra_0.3-1 CCl4_1.0.6
simpleaffy_2.14.05
[5] affyPLM_1.14.0 gcrma_2.10.0
matchprobes_1.10.0 RColorBrewer_1.0-2
[9] vsn_3.2.1 limma_2.12.0 affy_1.16.0
preprocessCore_1.0.0
[13] affyio_1.6.1 genefilter_1.16.0 survival_2.34
geneplotter_1.16.0
[17] lattice_0.17-2 annotate_1.16.1 xtable_1.5-2
AnnotationDbi_1.0.6
[21] RSQLite_0.6-4 DBI_0.2-4 Biobase_1.16.1
loaded via a namespace (and not attached):
[1] KernSmooth_2.22-21
>
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