[BioC] arrayQualityMetrics

Al Ivens alicat at sanger.ac.uk
Wed Dec 19 09:30:53 CET 2007


Hi,

I have been using arrayQualityMetrics, and find it very useful.
However, to make it even more useful, would it be possible to have
legends for some of the plots, e.g. density/ecdf, RNAdeg incorporated in
the output?

Cheers and thanks,

a


> sessionInfo()
R version 2.6.0 (2007-10-03) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
 [1] grid      splines   tools     stats     graphics  grDevices utils
datasets  methods   base     

other attached packages:
 [1] arrayQualityMetrics_1.2.0 latticeExtra_0.3-1        CCl4_1.0.6
simpleaffy_2.14.05       
 [5] affyPLM_1.14.0            gcrma_2.10.0
matchprobes_1.10.0        RColorBrewer_1.0-2       
 [9] vsn_3.2.1                 limma_2.12.0              affy_1.16.0
preprocessCore_1.0.0     
[13] affyio_1.6.1              genefilter_1.16.0         survival_2.34
geneplotter_1.16.0       
[17] lattice_0.17-2            annotate_1.16.1           xtable_1.5-2
AnnotationDbi_1.0.6      
[21] RSQLite_0.6-4             DBI_0.2-4                 Biobase_1.16.1


loaded via a namespace (and not attached):
[1] KernSmooth_2.22-21
> 




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