[BioC] arrayQualityMetrics

[audrey]

Hi Al,

Thank you for the useful feedback. In the development version of 
arrayQualityMetrics, I have added a legend with the name of the 
experiments on the density and ecdf plots. I will think about adding the 
same on the RNAdeg plot in the next version.
However when there are too many experiments there is not enough place on 
the plot to write all the experiment names so I advice you in that case 
to use the argument "split.plots" of arrayQualityMetrics and to set it 
at 20 maximum.

Thank you,
Audrey


Al Ivens wrote:
> Hi,
>
> I have been using arrayQualityMetrics, and find it very useful.
> However, to make it even more useful, would it be possible to have
> legends for some of the plots, e.g. density/ecdf, RNAdeg incorporated in
> the output?
>
> Cheers and thanks,
>
> a
>
>
>   
>> sessionInfo()
>>     
> R version 2.6.0 (2007-10-03) 
> i386-pc-mingw32 
>
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United
> Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>
> attached base packages:
>  [1] grid      splines   tools     stats     graphics  grDevices utils
> datasets  methods   base     
>
> other attached packages:
>  [1] arrayQualityMetrics_1.2.0 latticeExtra_0.3-1        CCl4_1.0.6
> simpleaffy_2.14.05       
>  [5] affyPLM_1.14.0            gcrma_2.10.0
> matchprobes_1.10.0        RColorBrewer_1.0-2       
>  [9] vsn_3.2.1                 limma_2.12.0              affy_1.16.0
> preprocessCore_1.0.0     
> [13] affyio_1.6.1              genefilter_1.16.0         survival_2.34
> geneplotter_1.16.0       
> [17] lattice_0.17-2            annotate_1.16.1           xtable_1.5-2
> AnnotationDbi_1.0.6      
> [21] RSQLite_0.6-4             DBI_0.2-4                 Biobase_1.16.1
>
>
> loaded via a namespace (and not attached):
> [1] KernSmooth_2.22-21
>   
>
>
>
>
>