October 2014 Archives by thread

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Starting: Wed Oct 1 00:45:37 CEST 2014
Ending: Fri Oct 31 23:57:23 CET 2014
Messages: 243

• [Bioc-devel] new package build problems   Karl Stamm
  • [Bioc-devel] new package build problems   Dan Tenenbaum
• [Bioc-devel] Cannot interact with a BigWig file on the web with rtracklayer (Windows specific)   Leonardo Collado Torres
• [Bioc-devel] Installing Development Version of Repitools   Dario Strbenac
  • [Bioc-devel] Installing Development Version of Repitools   Martin Morgan
    • [Bioc-devel] Installing Development Version of Repitools   Dario Strbenac
• [Bioc-devel] GenomicFiles: chunking   Michael Love
  • [Bioc-devel] GenomicFiles: chunking   Valerie Obenchain
    • [Bioc-devel] GenomicFiles: chunking   Valerie Obenchain
    • [Bioc-devel] GenomicFiles: chunking   Michael Love
      • [Bioc-devel] GenomicFiles: chunking   Valerie Obenchain
• [Bioc-devel] Rsamtools: applyPileups seg fault (!!)   Dan Gatti
• [Bioc-devel] October Newsletter   Valerie Obenchain
• [Bioc-devel] minor suggestion for BiocStyle?   Hervé Pagès
  • [Bioc-devel] minor suggestion for BiocStyle?   Ramon Diaz-Uriarte
• [Bioc-devel] Add a new developer/maintainer   Setia Pramana
  • [Bioc-devel] Add a new developer/maintainer   Wolfgang Huber
    • [Bioc-devel] Add a new developer/maintainer   Andrzej Oleś
      • [Bioc-devel] Add a new developer/maintainer   Dan Tenenbaum
• [Bioc-devel] RMarkdown for vignettes   Gordon Ball
  • [Bioc-devel] RMarkdown for vignettes   James W. MacDonald
    • [Bioc-devel] RMarkdown for vignettes   Henrik Bengtsson
      • [Bioc-devel] RMarkdown for vignettes   Dan Tenenbaum
      • [Bioc-devel] RMarkdown for vignettes   Andrzej Oleś
      • [Bioc-devel] RMarkdown for vignettes (builder issues)   Gordon Ball
      • [Bioc-devel] RMarkdown for vignettes (builder issues)   Dan Tenenbaum
• [Bioc-devel] GenomicFiles: some random issues   Michael Lawrence
• [Bioc-devel] NAMESPACE question   Robert Castelo
  • [Bioc-devel] NAMESPACE question   Martin Morgan
    • [Bioc-devel] NAMESPACE question   Robert Castelo
      • [Bioc-devel] NAMESPACE question   Michael Lawrence
      • [Bioc-devel] NAMESPACE question   Robert Castelo
      • [Bioc-devel] NAMESPACE question   Martin Morgan
      • [Bioc-devel] NAMESPACE question   Michael Lawrence
      • [Bioc-devel] NAMESPACE question   Martin Morgan
      • [Bioc-devel] NAMESPACE question   Dario Strbenac
      • [Bioc-devel] NAMESPACE question   Michael Lawrence
      • [Bioc-devel] NAMESPACE question   Martin Morgan
      • [Bioc-devel] NAMESPACE question   Robert Castelo
      • [Bioc-devel] NAMESPACE question   Martin Morgan
      • [Bioc-devel] NAMESPACE question   Hervé Pagès
      • [Bioc-devel] NAMESPACE question   Robert Castelo
• [Bioc-devel] Bug in GenomicRanges:::compare   Peter Hickey
  • [Bioc-devel] Bug in GenomicRanges:::compare   Martin Morgan
• [Bioc-devel] Rmarkdown built html vignette not included in final package tarball   Leo Lahti
  • [Bioc-devel] Rmarkdown built html vignette not included in final package tarball   Sean Davis
    • [Bioc-devel] Rmarkdown built html vignette not included in final package tarball   Leo Lahti
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Leo Lahti
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Dan Tenenbaum
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Leo Lahti
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Dan Tenenbaum
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Leo Lahti
      • [Bioc-devel] Fwd: Rmarkdown built html vignette not included in final package tarball   Dan Tenenbaum
  • [Bioc-devel] Rmarkdown built html vignette not included in final package tarball   Leo Lahti
    • [Bioc-devel] Rmarkdown built html vignette not included in final package tarball   Dan Tenenbaum
• [Bioc-devel] odd vignette dependency issue   Daniel Schmolze
  • [Bioc-devel] odd vignette dependency issue   Dan Tenenbaum
  • [Bioc-devel] odd vignette dependency issue   Martin Morgan
    • [Bioc-devel] odd vignette dependency issue   Martin Morgan
• [Bioc-devel] BiocStyle on windows with spaces in path names   Neumann, Steffen
  • [Bioc-devel] BiocStyle on windows with spaces in path names   James W. MacDonald
    • [Bioc-devel] BiocStyle on windows with spaces in path names   Martin Morgan
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Henrik Bengtsson
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Martin Morgan
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Henrik Bengtsson
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Henrik Bengtsson
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Henrik Bengtsson
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Martin Morgan
      • [Bioc-devel] BiocStyle on windows with spaces in path names   Henrik Bengtsson
• [Bioc-devel] Error running table() on an RleList returned by coverage()   Rory Stark
  • [Bioc-devel] Error running table() on an RleList returned by coverage()   Hervé Pagès
    • [Bioc-devel] Error running table() on an RleList returned by coverage()   Rory Stark
• [Bioc-devel] droplevels method for DataFrame?   Ryan C. Thompson
  • [Bioc-devel] droplevels method for DataFrame?   Michael Lawrence
    • [Bioc-devel] droplevels method for DataFrame?   Ryan C. Thompson
      • [Bioc-devel] droplevels method for DataFrame?   Michael Lawrence
• [Bioc-devel] GOexpress: new package to visualise microarray and RNAseq data using gene ontology annotations   Kevin Rue-Albrecht
• [Bioc-devel] S4Vectors unit tests   Michael Lawrence
  • [Bioc-devel] S4Vectors unit tests   Hervé Pagès
• [Bioc-devel] Request for Comments on The NIH Software Discovery Index--a system for linking software, publications and users in the research community   Sean Davis
• [Bioc-devel] DESeq2 time series - How to set the experimental design   Nadia Kamal
  • [Bioc-devel] DESeq2 time series - How to set the experimental design   Michael Love
• [Bioc-devel] Updating package NEWS files for Bioconductor 3.0 release announcement   Dan Tenenbaum
  • [Bioc-devel] Updating package NEWS files for Bioconductor 3.0 release announcement   Kasper Daniel Hansen
• [Bioc-devel] Keep the bioc-help email list running?   Luo Weijun
  • [Bioc-devel] Keep the bioc-help email list running?   Martin Morgan
    • [Bioc-devel] Keep the bioc-help email list running?   Luo Weijun
      • [Bioc-devel] Keep the bioc-help email list running?   Dan Tenenbaum
• [Bioc-devel] Faculty Position in Computational Systems Biology at UC Riverside   Thomas Girke
• [Bioc-devel] a warning we may not need any more?   Vincent Carey
  • [Bioc-devel] a warning we may not need any more?   Hervé Pagès
• [Bioc-devel] package ‘FEM’ is not available (for R version 3.0.2)   Yinming Jiao
  • [Bioc-devel] package ‘FEM’ is not available (for R version 3.0.2)   Dan Tenenbaum
  • [Bioc-devel] package ‘FEM’ is not available (for R version 3.0.2)   Hervé Pagès
• [Bioc-devel] no more commits allowed before release ?   Kevin Rue-Albrecht
  • [Bioc-devel] no more commits allowed before release ?   Dan Tenenbaum
    • [Bioc-devel] no more commits allowed before release ?   Kevin Rue-Albrecht
      • [Bioc-devel] no more commits allowed before release ?   Dan Tenenbaum
      • [Bioc-devel] no more commits allowed before release ?   Robert M. Flight
      • [Bioc-devel] no more commits allowed before release ?   Kevin Rue-Albrecht
      • [Bioc-devel] no more commits allowed before release ?   Kevin Rue-Albrecht
• [Bioc-devel] AnnotationDbi::loadDb() now requires dbType and dbPackage?   Leonardo Collado Torres
  • [Bioc-devel] AnnotationDbi::loadDb() now requires dbType and dbPackage?   Leonardo Collado Torres
    • [Bioc-devel] AnnotationDbi::loadDb() now requires dbType and dbPackage?   Marc Carlson
  • [Bioc-devel] AnnotationDbi::loadDb() now requires dbType and dbPackage?   Martin Morgan
    • [Bioc-devel] AnnotationDbi::loadDb() now requires dbType and dbPackage?   Leonardo Collado Torres
• [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Vincent Carey
  • [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Martin Morgan
    • [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Michael Lawrence
      • [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Vincent Carey
      • [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Hervé Pagès
      • [Bioc-devel] 'semantically rich' subsetting of SummarizedExperiments   Michael Lawrence
• [Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package   Martin, Tiphaine
  • [Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package   Vincent Carey
    • [Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package   Hahne, Florian
      • [Bioc-devel] Non-ASCII in datase from Biomart EMBL via Gviz package   Martin, Tiphaine
• [Bioc-devel] warning when merging disjoint sets of seqlevels   Michael Lawrence
  • [Bioc-devel] warning when merging disjoint sets of seqlevels   Hervé Pagès
    • [Bioc-devel] warning when merging disjoint sets of seqlevels   Michael Lawrence
      • [Bioc-devel] warning when merging disjoint sets of seqlevels   Hervé Pagès
• [Bioc-devel] runnable examples for internal function ?   Martin, Tiphaine
  • [Bioc-devel] runnable examples for internal function ?   Dan Tenenbaum
    • [Bioc-devel] runnable examples for internal function ?   Michael Lawrence
      • [Bioc-devel] runnable examples for internal function ?   Martin, Tiphaine
      • [Bioc-devel] runnable examples for internal function ?   Hervé Pagès
      • [Bioc-devel] runnable examples for internal function ?   Martin, Tiphaine
      • [Bioc-devel] runnable examples for internal function ?   Hervé Pagès
      • [Bioc-devel] runnable examples for internal function ?   Martin, Tiphaine
      • [Bioc-devel] runnable examples for internal function ?   Dan Tenenbaum
      • [Bioc-devel] runnable examples for internal function ?   Leonardo Collado Torres
• [Bioc-devel] Important: Bioconductor 3.0 branch to be created today - do not commit during this time   Dan Tenenbaum
• [Bioc-devel] BioC 3.0 branch created   Dan Tenenbaum
• [Bioc-devel] New package: PAA   Michael Turewicz
• [Bioc-devel] Git-svn bridge for BioC 3.0   Leonardo Collado Torres
  • [Bioc-devel] Git-svn bridge for BioC 3.0   Dan Tenenbaum
    • [Bioc-devel] Git-svn bridge for BioC 3.0   Leonardo Collado Torres
• [Bioc-devel] European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg   Wolfgang Huber
• [Bioc-devel] Bioconductor 3.0 is released!   Dan Tenenbaum
• [Bioc-devel] New package available: flowcatchR!   Federico Marini
• [Bioc-devel] How to update annotation packages   Robert Castelo
  • [Bioc-devel] How to update annotation packages   Valerie Obenchain
    • [Bioc-devel] How to update annotation packages   Marc Carlson
• [Bioc-devel] Bioonductor package tracker has moved   Dan Tenenbaum
  • [Bioc-devel] Bioonductor package tracker has moved   zhao shilin
    • [Bioc-devel] Bioonductor package tracker has moved   Dan Tenenbaum
      • [Bioc-devel] Bioonductor package tracker has moved   Tim Triche, Jr.
      • [Bioc-devel] Bioonductor package tracker has moved   Dan Tenenbaum
      • [Bioc-devel] Bioonductor package tracker has moved   Tim Triche, Jr.
      • [Bioc-devel] Bioonductor package tracker has moved   Kevin Rue-Albrecht
      • [Bioc-devel] Bioonductor package tracker has moved   zhao shilin
• [Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build   Kevin Rue-Albrecht
  • [Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build   Robert Castelo
    • [Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build   Dan Tenenbaum
      • [Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build   Kevin Rue-Albrecht
      • [Bioc-devel] "'BiocInstaller' package not in repository" error during nightly build   Dan Tenenbaum
• [Bioc-devel] error about Display environment/ biomart for the build of my package   Martin, Tiphaine
  • [Bioc-devel] error about Display environment/ biomart for the build of my package   Dan Tenenbaum
• [Bioc-devel] Link posting guide in support forum   Julian Gehring
  • [Bioc-devel] Link posting guide in support forum   Dan Tenenbaum
• [Bioc-devel] Change of schema of ENSEMBL biomart   Martin, Tiphaine
  • [Bioc-devel] Change of schema of ENSEMBL biomart   Kevin Rue-Albrecht
  • [Bioc-devel] Change of schema of ENSEMBL biomart   Thomas Maurel
  • [Bioc-devel] Change of schema of ENSEMBL biomart   Panagiotis Moulos
• [Bioc-devel] Why be default 'D' is not dropped from coverage?   Leonardo Collado Torres
  • [Bioc-devel] Why be default 'D' is not dropped from coverage?   Hervé Pagès
    • [Bioc-devel] Why be default 'D' is not dropped from coverage?   Leonardo Collado Torres
• [Bioc-devel] plotPCA for BiocGenerics   Michael Love
  • [Bioc-devel] plotPCA for BiocGenerics   Kevin Coombes
    • [Bioc-devel] plotPCA for BiocGenerics   Michael Love
      • [Bioc-devel] plotPCA for BiocGenerics   Kevin Coombes
      • [Bioc-devel] plotPCA for BiocGenerics   Michael Love
      • [Bioc-devel] plotPCA for BiocGenerics   davide risso
      • [Bioc-devel] plotPCA for BiocGenerics   Kevin Coombes
      • [Bioc-devel] plotPCA for BiocGenerics   davide risso
      • [Bioc-devel] plotPCA for BiocGenerics   Kevin Coombes
      • [Bioc-devel] plotPCA for BiocGenerics   Michael Love
      • [Bioc-devel] plotPCA for BiocGenerics   Kevin Coombes
  • [Bioc-devel] plotPCA for BiocGenerics   Thomas Dybdal Pedersen
    • [Bioc-devel] plotPCA for BiocGenerics   Michael Lawrence
      • [Bioc-devel] plotPCA for BiocGenerics   Thomas Lin Pedersen
      • [Bioc-devel] plotPCA for BiocGenerics   Steve Lianoglou
      • [Bioc-devel] plotPCA for BiocGenerics   Ryan C. Thompson
      • [Bioc-devel] plotPCA for BiocGenerics   Thomas Lin Pedersen
• [Bioc-devel] Important news about pending updates to the RSQLite package   Dan Tenenbaum
• [Bioc-devel] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Leonardo Collado Torres
  • [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Sonali Arora
    • [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Leonardo Collado Torres
      • [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Leonardo Collado Torres
      • [Bioc-devel] [devteam-bioc] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Leonardo Collado Torres
      • [Bioc-devel] A more flexible GenomeInfoDb::mapSeqlevels(): used supported info but don't break with new organisms/toy examples   Sonali Arora
• [Bioc-devel] Whom to contact for adding an organism to GenomeInfoDb?   Leonardo Collado Torres
  • [Bioc-devel] [devteam-bioc] Whom to contact for adding an organism to GenomeInfoDb?   Sonali Arora
    • [Bioc-devel] [devteam-bioc] Whom to contact for adding an organism to GenomeInfoDb?   Leonardo Collado Torres
  • [Bioc-devel] Whom to contact for adding an organism to GenomeInfoDb?   Sonali Arora
• [Bioc-devel] Cant sign up on support site!   Felix Klein
  • [Bioc-devel] Cant sign up on support site!   Dan Tenenbaum
• [Bioc-devel] check warning of QUALIFIER package   Mike
  • [Bioc-devel] check warning of QUALIFIER package   Hervé Pagès
• [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Robert Castelo
  • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Valerie Obenchain
    • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Robert Castelo
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Valerie Obenchain
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Michael Lawrence
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Robert Castelo
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Michael Lawrence
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Robert Castelo
      • [Bioc-devel] VariantAnnotation::readVcf(fl, seqinfo(scanVcfHeader(fl)) problem   Hervé Pagès
• [Bioc-devel] Documentation on how to update a BioC experimental package?   Henrik Bengtsson
  • [Bioc-devel] Documentation on how to update a BioC experimental package?   Vincent Carey
  • [Bioc-devel] Documentation on how to update a BioC experimental package?   Dan Tenenbaum
    • [Bioc-devel] Documentation on how to update a BioC experimental package?   Hervé Pagès
• [Bioc-devel] rhdf5 help   Joseph Nathaniel Paulson
• [Bioc-devel] compEpiTools and methylPipe   Kamal
• [Bioc-devel] Announcing the new R pakage GSAR   Rahmatallah, Yasir
• [Bioc-devel] depends on packages providing classes   Kasper Daniel Hansen
  • [Bioc-devel] depends on packages providing classes   Vincent Carey
    • [Bioc-devel] depends on packages providing classes   James W. MacDonald
      • [Bioc-devel] depends on packages providing classes   Kasper Daniel Hansen
      • [Bioc-devel] depends on packages providing classes   Vincent Carey
      • [Bioc-devel] depends on packages providing classes   Hervé Pagès
      • [Bioc-devel] depends on packages providing classes   Vincent Carey
      • [Bioc-devel] depends on packages providing classes   Hervé Pagès
      • [Bioc-devel] depends on packages providing classes   Michael Lawrence
      • [Bioc-devel] depends on packages providing classes   Vincent Carey
      • [Bioc-devel] depends on packages providing classes   Hervé Pagès
      • [Bioc-devel] depends on packages providing classes   Vincent Carey
      • [Bioc-devel] depends on packages providing classes   Henrik Bengtsson
      • [Bioc-devel] depends on packages providing classes   Hervé Pagès
      • [Bioc-devel] depends on packages providing classes   Michael Lawrence
      • [Bioc-devel] depends on packages providing classes   Michael Lawrence
• [Bioc-devel] getting a listing of all src packages   Darin Perusich
  • [Bioc-devel] getting a listing of all src packages   Sean Davis
    • [Bioc-devel] getting a listing of all src packages   Hervé Pagès
• [Bioc-devel] R-devel update schedule/strategy for Bioc devel build machines   Gabe Becker
  • [Bioc-devel] R-devel update schedule/strategy for Bioc devel build machines   Dan Tenenbaum
    • [Bioc-devel] R-devel update schedule/strategy for Bioc devel build machines   Dan Tenenbaum
• [Bioc-devel] experiment data package versioning   Laurent Gatto
  • [Bioc-devel] experiment data package versioning   Henrik Bengtsson
    • [Bioc-devel] experiment data package versioning   Dan Tenenbaum
    • [Bioc-devel] experiment data package versioning   Laurent Gatto
  • [Bioc-devel] experiment data package versioning   Hervé Pagès
    • [Bioc-devel] experiment data package versioning   Dan Tenenbaum
• [Bioc-devel] More than 1 citation in landing page   Leonardo Collado Torres

Last message date: Fri Oct 31 23:57:23 CET 2014
Archived on: Fri Oct 31 23:57:49 CET 2014

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