[Bioc-devel] Documentation on how to update a BioC experimental package?

[Hervé Pagès]

Hi Henrik,

FWIW there is some additional information here:

   https://stat.ethz.ch/pipermail/bioc-devel/2014-January/005156.html

In particular the section starting at "One important difference with
the svn software repository" provides some useful hints on how to
commit changes to the data (see step 4.).

H.

On 10/23/2014 07:46 PM, Dan Tenenbaum wrote:
>
>
> ----- Original Message -----
>> From: "Vincent Carey" <stvjc at channing.harvard.edu>
>> To: "Henrik Bengtsson" <hb at biostat.ucsf.edu>
>> Cc: "bioC-devel" <bioc-devel at stat.math.ethz.ch>
>> Sent: Thursday, October 23, 2014 7:45:13 PM
>> Subject: Re: [Bioc-devel] Documentation on how to update a BioC experimental	package?
>>
>> There is a README.txt in the pkgs folder.
>>
>> I will attach it.  I think this is accurate, but there may be
>> something
>> else on the site.
>>
>
> See the Experiment Data Packages section of
>
> http://www.bioconductor.org/developers/how-to/source-control/
>
> Dan
>
>
>>
>>
>> On Thu, Oct 23, 2014 at 10:23 PM, Henrik Bengtsson
>> <hb at biostat.ucsf.edu>
>> wrote:
>>
>>> It's been a while since I worked with experimental packages.  Where
>>> can I find documentation on how to (Subversion) update our
>>> AffymetrixDataTestFiles package with additional data files?  All I
>>> know is that the SVN repository only contains a stub of the package
>>> and
>>> http://www.bioconductor.org/developers/package-guidelines/#package-types
>>> provides little information and basically only point to the devel
>>> mailing list.
>>>
>>> Thanks,
>>>
>>> Henrik
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
> _______________________________________________
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>

-- 
Hervé Pagès

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