[Bioc-devel] runnable examples for internal function ?

Martin, Tiphaine tiphaine.martin at kcl.ac.uk
Mon Oct 13 22:29:08 CEST 2014


I would like to know if I need to add a runnable example for each function that has keyword either internal or not.

I ask that because with BiocCheck, version 1.0.2, I had a message for function with keyword "internal" such as "

Checking exported objects have runnable examples...
    * CONSIDER: Adding runnable examples to the following man pages
      which document exported objects:"

and now, I have an error message with BiocCheck, version 1.1.18

* Checking exported objects have runnable examples...
Error in if (line == "## No test: " || insideDontTest || line == "## End(No test)") { :
  missing value where TRUE/FALSE needed
Calls: <Anonymous> ... checkExportsAreDocumented -> doesManPageHaveRunnableExample -> removeDontTest
Execution halted



Tiphaine Martin
PhD Research Student | King's College
The Department of Twin Research & Genetic Epidemiology | Genetics & Molecular Medicine Division
St Thomas' Hospital
4th Floor, Block D, South Wing
SE1 7EH, London
United Kingdom

email : tiphaine.martin at kcl.ac.uk
Fax: +44 (0) 207 188 6761

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