[Bioc-devel] How to update annotation packages

Marc Carlson mcarlson at fhcrc.org
Thu Oct 16 19:09:35 CEST 2014

Hi Robert,

I am sending you another invite now.


On 10/16/2014 08:59 AM, Valerie Obenchain wrote:
> Hi Robert,
> Annotation packages are generally updated before each release. You 
> should have received an email from Marc (cc'd) last month asking if 
> you had any updates. Updated packages are uploaded to our ftp server 
> and Marc adds them to the repository.
> If you need to make a change I think Marc needs to give you access to 
> the server or maybe you already have it. He'll be able to fill in the 
> details.
> Valerie
> On 10/15/2014 09:08 AM, Robert Castelo wrote:
>> Hi,
>> i submitted one release ago the following annotation packages:
>> MafDb.ALL.wgs.phase1.release.v3.20101123
>> MafDb.ESP6500SI.V2.SSA137.dbSNP138
>> phastCons100way.UCSC.hg19
>> for which i'm also the "maintainer".
>> while the functionality to access their annotation resides in another
>> software package i maintain (VariantFiltering), they contain some
>> functionality to help updating their annotations themselves. i need to
>> update those R scripts which are part of the annotation packages,
>> however, i found nowhere whether this is possible via svn.
>> how should i proceed with this, should i made the changes local and
>> submit the new version, or is there some 'svn' way to do it just like
>> with software or experiment data packages?
>> thanks,
>> robert.
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel

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