October 2015 Archives by date

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Starting: Thu Oct 1 00:35:39 CEST 2015
Ending: Fri Oct 30 17:05:07 CET 2015
Messages: 190

• [Bioc-devel] packages marked as deprecated in the upcoming release   Dan Tenenbaum
• [Bioc-devel] Adding a lengths() method to List class   Michael Lawrence
• [Bioc-devel] Adding a lengths() method to List class   Hervé Pagès
• [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem   Robert Castelo
• [Bioc-devel] Bioconductor Newsletter - October 2015   Obenchain, Valerie
• [Bioc-devel] BUG: emacs orgmode ob-R.el function org-babel-R-evaluate-session over aggressively performs "; ; cleanup extra prompts left in output" and a possible workaround   Cook, Malcolm
• [Bioc-devel] regioneR failing to build and causing other packages to fail   DjekidelMohamed nadhir
• [Bioc-devel] regioneR failing to build and causing other packages to fail   Dan Tenenbaum
• [Bioc-devel] Adding a lengths() method to List class   Michael Lawrence
• [Bioc-devel] DLL maps not found while compiling package in Windows machine   Miguel Juliá
• [Bioc-devel] Adding a lengths() method to List class   Peter Hickey
• [Bioc-devel] IPI numbers in annotation packages   James W. MacDonald
• [Bioc-devel] IPI numbers in annotation packages   Marc Carlson
• [Bioc-devel] IPI numbers in annotation packages   James W. MacDonald
• [Bioc-devel] IPI numbers in annotation packages   Marc Carlson
• [Bioc-devel] IPI numbers in annotation packages   James W. MacDonald
• [Bioc-devel] zzz.R in GenoView   Dan Tenenbaum
• [Bioc-devel] zzz.R in GenoView   Hervé Pagès
• [Bioc-devel] zzz.R in GenoView   Dan Tenenbaum
• [Bioc-devel] zzz.R in GenoView   Kasper Daniel Hansen
• [Bioc-devel] zzz.R in GenoView   Hervé Pagès
• [Bioc-devel] Circular dependencies and vignette building   Jonathan Cairns
• [Bioc-devel] Circular dependencies and vignette building   Hervé Pagès
• [Bioc-devel] Circular dependencies and vignette building   Dan Tenenbaum
• [Bioc-devel] Circular dependencies and vignette building   Jonathan Cairns
• [Bioc-devel] Updating package NEWS files for Bioconductor 3.2 release announcement (and biocViews)   Dan Tenenbaum
• [Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem   Obenchain, Valerie
• [Bioc-devel] Moderating "answers" into comments on other answers/comments on the support site?   Ryan C. Thompson
• [Bioc-devel] Moderating "answers" into comments on other answers/comments on the support site?   Dan Tenenbaum
• [Bioc-devel] Moderating "answers" into comments on other answers/comments on the support site?   Michael Lawrence
• [Bioc-devel] Moderating "answers" into comments on other answers/comments on the support site?   Dan Tenenbaum
• [Bioc-devel] (persistent) issue with rgl dependency on Windows server   Federico Marini
• [Bioc-devel] (persistent) issue with rgl dependency on Windows server   Dan Tenenbaum
• [Bioc-devel] (persistent) issue with rgl dependency on Windows server   Federico Marini
• [Bioc-devel] Bug Report - for goseq - for RefSeq Genes track - RefSeq identifiers or Entrez Gene ID ?   Arora, Sonali
• [Bioc-devel] RiboProfiling: a new Bioconductor package for ribo-seq data analysis   Alexandra Popa
• [Bioc-devel] Minor (impossible to trigger?) bug in assay, SummarizedExperiment0, character-method   Peter Hickey
• [Bioc-devel] Minor (impossible to trigger?) bug in assay, SummarizedExperiment0, character-method   Morgan, Martin
• [Bioc-devel] error in stable AnnotationHub   Kasper Daniel Hansen
• [Bioc-devel] Bug Report - for goseq - for RefSeq Genes track - RefSeq identifiers or Entrez Gene ID ?   Nadia Davidson
• [Bioc-devel] error in stable AnnotationHub   Morgan, Martin
• [Bioc-devel] SICtools: a new Bioconductor package to discover SNV/Indel differences between two paired-bam files   Gmail2
• [Bioc-devel] Bug Report - for goseq - for RefSeq Genes track - RefSeq identifiers or Entrez Gene ID ?   Arora, Sonali
• [Bioc-devel] Package Submission   ZHANG Yu
• [Bioc-devel] Package Submission   Dan Tenenbaum
• [Bioc-devel] Package Submission   ZHANG Yu
• [Bioc-devel] Package Submission   ZHANG Yu
• [Bioc-devel] Bioconductor Workflows: TOC and displaying document details   Andrzej Oleś
• [Bioc-devel] Important: Bioconductor 3.2 branch to be created today - do not commit during this time   Dan Tenenbaum
• [Bioc-devel] BioC 3.2 branch created   Dan Tenenbaum
• [Bioc-devel] broken awards system on BioC support site   Aaron Lun
• [Bioc-devel] Bioconductor 3.2 is released!   Dan Tenenbaum
• [Bioc-devel] broken awards system on BioC support site   Dan Tenenbaum
• [Bioc-devel] Adding a lengths() method to List class   Michael Lawrence
• [Bioc-devel] A method for combining SummarizedExperiment objects   Peter Hickey
• [Bioc-devel] A method for combining SummarizedExperiment objects   Peter Hickey
• [Bioc-devel] New package: FindMyFriends - Comparative microbial genomics   Thomas Lin Pedersen
• [Bioc-devel] New package: MEAL - Methylation and Expression AnaLyzer   Ruiz Arenas, Carlos
• [Bioc-devel] SV4Vectors installation problem   Marcin Cieślik
• [Bioc-devel] SV4Vectors installation problem   Morgan, Martin
• [Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?   Leonardo Collado Torres
• [Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?   Dan Tenenbaum
• [Bioc-devel] Git-svn: getting it to work while keeping your git history   Leonardo Collado Torres
• [Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?   Leonardo Collado Torres
• [Bioc-devel] Git-svn: getting it to work while keeping your git history   Jim Hester
• [Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?   Jim Hester
• [Bioc-devel] SV4Vectors installation problem   Michael Lawrence
• [Bioc-devel] Git-svn: getting it to work while keeping your git history   Leonardo Collado Torres
• [Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?   Leonardo Collado Torres
• [Bioc-devel] Git-svn: getting it to work while keeping your git history   Jim Hester
• [Bioc-devel] A method for combining SummarizedExperiment objects   Morgan, Martin
• [Bioc-devel] Adding a lengths() method to List class   Michael Lawrence
• [Bioc-devel] SV4Vectors installation problem   Hervé Pagès
• [Bioc-devel] Adding a lengths() method to List class   Hervé Pagès
• [Bioc-devel] New packages: DAPAR and Prostar   Samuel Wieczorek
• [Bioc-devel] SV4Vectors installation problem   Michael Lawrence
• [Bioc-devel] SV4Vectors installation problem   Marcin Cieślik
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] ideas for ScanBamParam filters   Michael Lawrence
• [Bioc-devel] ideas for ScanBamParam filters   Morgan, Martin
• [Bioc-devel] readGAlignmentPairs with discordant strand   Morgan, Martin
• [Bioc-devel] ideas for ScanBamParam filters   Michael Lawrence
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] BioC 3.2 branch created   Levi Waldron
• [Bioc-devel] BioC 3.2 branch created   Dan Tenenbaum
• [Bioc-devel] readGAlignmentPairs with discordant strand   Hervé Pagès
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] readGAlignmentPairs with discordant strand   Hervé Pagès
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] BioC 3.2 branch created   Hervé Pagès
• [Bioc-devel] BioC 3.2 branch created   Dan Tenenbaum
• [Bioc-devel] BioC 3.2 branch created   Hervé Pagès
• [Bioc-devel] Error in GenomicFeatures::makeTxDbFromUCSC()   Arora, Sonali
• [Bioc-devel] Error in GenomicFeatures::makeTxDbFromUCSC()   Arora, Sonali
• [Bioc-devel] Error in GenomicFeatures::makeTxDbFromUCSC()   Michael Lawrence
• [Bioc-devel] Error in GenomicFeatures::makeTxDbFromUCSC()   Hervé Pagès
• [Bioc-devel] Error in GenomicFeatures::makeTxDbFromUCSC()   Arora, Sonali
• [Bioc-devel] BioC 3.2 branch created   Diego Diez
• [Bioc-devel] BioC 3.2 branch created   Dan Tenenbaum
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] readGAlignmentPairs with discordant strand   Morgan, Martin
• [Bioc-devel] readGAlignmentPairs with discordant strand   Michael Lawrence
• [Bioc-devel] test coverage in Release packages   Ramon Diaz-Uriarte
• [Bioc-devel] Help using Git with Bioconductor SVN repositories   Peter Hickey
• [Bioc-devel] Help using Git with Bioconductor SVN repositories   Elena Grassi
• [Bioc-devel] Missing "release-3.2" branch of my package   Rainer Johannes
• [Bioc-devel] Missing "release-3.2" branch of my package   Jim Hester
• [Bioc-devel] BiocGenerics attach when GenomicFeatures imported   Marcin Cieślik
• [Bioc-devel] Missing "release-3.2" branch of my package   Rainer Johannes
• [Bioc-devel] Help using Git with Bioconductor SVN repositories   Leonardo Collado Torres
• [Bioc-devel] readGAlignmentPairs with discordant strand   Hervé Pagès
• [Bioc-devel] Documentation Section of Package Landing Page messed up   Arora, Sonali
• [Bioc-devel] Documentation Section of Package Landing Page messed up   Dan Tenenbaum
• [Bioc-devel] BiocGenerics attach when GenomicFeatures imported   Hervé Pagès
• [Bioc-devel] Documentation Section of Package Landing Page messed up   Arora, Sonali
• [Bioc-devel] Bioconductor Workflows: TOC and displaying document details   Dan Tenenbaum
• [Bioc-devel] Bioc 3.2 devel or release   Laurent Gatto
• [Bioc-devel] Bioc 3.2 devel or release   Dan Tenenbaum
• [Bioc-devel] BiocGenerics attach when GenomicFeatures imported   Marcin Cieślik
• [Bioc-devel] BiocGenerics attach when GenomicFeatures imported   Hervé Pagès
• [Bioc-devel] A method for combining SummarizedExperiment objects   Peter Hickey
• [Bioc-devel] IRanges broken in devel?   Bernd Klaus
• [Bioc-devel] Accepting an answer on the support website   Kevin Rue-Albrecht
• [Bioc-devel] New package: LOLA - Locus overlap analysis for enrichment of genomic ranges   Nathan Sheffield
• [Bioc-devel] upgrading   Kasper Daniel Hansen
• [Bioc-devel] upgrading   Jim Hester
• [Bioc-devel] Accepting an answer on the support website   James W. MacDonald
• [Bioc-devel] upgrading   Robert Castelo
• [Bioc-devel] upgrading   Bernd Klaus
• [Bioc-devel] upgrading   Ramon Diaz-Uriarte
• [Bioc-devel] Accepting an answer on the support website   Kevin Rue-Albrecht
• [Bioc-devel] AnnotationHub Update.   Jim Java
• [Bioc-devel] Accepting an answer on the support website   James W. MacDonald
• [Bioc-devel] IRanges broken in devel?   Dan Tenenbaum
• [Bioc-devel] upgrading   Morgan, Martin
• [Bioc-devel] Accepting an answer on the support website   Dan Tenenbaum
• [Bioc-devel] upgrading   Kasper Daniel Hansen
• [Bioc-devel] test coverage in Release packages   Dan Tenenbaum
• [Bioc-devel] New biocView - RiboSeq   Arora, Sonali
• [Bioc-devel] test coverage in Release packages   Ramon Diaz-Uriarte
• [Bioc-devel] IRanges broken in devel?   Bernd Klaus
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Robert Castelo
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Michael Lawrence
• [Bioc-devel] question regarding change to release version of package   Samuel E Zimmerman
• [Bioc-devel] question regarding change to release version of package   Jim Hester
• [Bioc-devel] question regarding change to release version of package   Dan Tenenbaum
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Hervé Pagès
• [Bioc-devel] question regarding change to release version of package   Kasper Daniel Hansen
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Michael Lawrence
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Hervé Pagès
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Michael Lawrence
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Robert Castelo
• [Bioc-devel] VariantAnnotation::VRanges() & defunct ifelse method for Rle objects in devel IRanges   Michael Lawrence
• [Bioc-devel] Bioconductor Workflows: TOC and displaying document details   Aaron Lun
• [Bioc-devel] Bioconductor Workflows: TOC and displaying document details   Dan Tenenbaum
• [Bioc-devel] Bioconductor Workflows: TOC and displaying document details   Andrzej Oleś
• [Bioc-devel] New biocView - RiboSeq   Arora, Sonali
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Arora, Sonali
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Thomas Girke
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Dario Strbenac
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Michael Lawrence
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Dario Strbenac
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Michael Lawrence
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Bernd Klaus
• [Bioc-devel] S4 Method of ExpressionSet Signature Not Found   Michael Lawrence
• [Bioc-devel] EuroBioc 2015, Cambridge UK, 7-8 December   Laurent Gatto
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Thomas Girke
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Hervé Pagès
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Thomas Girke
• [Bioc-devel] systemPipeR error - Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :   Arora, Sonali
• [Bioc-devel] riboSeqR error - matrix of zeros output from riboSeqR::readingFrame()   Arora, Sonali
• [Bioc-devel] riboSeqR error - matrix of zeros output from riboSeqR::readingFrame()   Tom Hardcastle
• [Bioc-devel] riboSeqR error - matrix of zeros output from riboSeqR::readingFrame()   Sonali B Arora
• [Bioc-devel] svn woes   Vincent Carey
• [Bioc-devel] svn woes   Dan Tenenbaum
• [Bioc-devel] svn woes   Vincent Carey
• [Bioc-devel] PLEASE READ: devel packages in release channel   Dan Tenenbaum
• [Bioc-devel] Builds all pointing to devel   Thomas Lin Pedersen
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Thomas Lin Pedersen
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Andrzej Oleś
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Kasper Daniel Hansen
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Thomas Lin Pedersen
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Jim Hester
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Thomas Lin Pedersen
• [Bioc-devel] Idea for improved visibility of Bioconductor packages   Jiří Hon
• [Bioc-devel] Builds all pointing to devel   Dan Tenenbaum
• [Bioc-devel] Vignette questions: location of html BiocStyle vignette, fake + real vignettes not necessary?   Leonardo Collado Torres
• [Bioc-devel] Vignette questions: location of html BiocStyle vignette, fake + real vignettes not necessary?   Dan Tenenbaum
• [Bioc-devel] Vignette questions: location of html BiocStyle vignette, fake + real vignettes not necessary?   Andrzej Oleś
• [Bioc-devel] Vignette questions: location of html BiocStyle vignette, fake + real vignettes not necessary?   Leonardo Collado Torres

Last message date: Fri Oct 30 17:05:07 CET 2015
Archived on: Fri Oct 30 17:06:12 CET 2015

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