[Bioc-devel] Github Bioconductor-mirror not updating for repo's that still had bridges?

Leonardo Collado Torres lcollado at jhu.edu
Thu Oct 15 20:02:09 CEST 2015


Ahh, ok! Thanks!

On Thu, Oct 15, 2015 at 12:23 PM, Jim Hester <james.f.hester at gmail.com> wrote:
> Leo,
>
> This issue is unrelated to having a git-svn bridge, the update script just
> failed during the version bump commit. The git mirrors should be updated to
> the current state soon.
>
> Jim
>
> On Thu, Oct 15, 2015 at 12:06 PM, Leonardo Collado Torres <lcollado at jhu.edu>
> wrote:
>>
>> I know that the git-svn bridge is deprecated as of the new release
>> yesterday. I'm migrating to using the git mirror, but they are not
>> updated for packages that had a bridge.
>>
>> Thanks for taking a look Dan!
>> Leo
>>
>> On Thu, Oct 15, 2015 at 11:52 AM, Dan Tenenbaum <dtenenba at fredhutch.org>
>> wrote:
>> > The git-svn bridge is deprecated and we recommend migrating to the git
>> > mirrors.
>> > At some point the git-svn bridge will no longer be supported.
>> > I will take a look at this.
>> > Dan
>> >
>> >
>> > ----- Original Message -----
>> >> From: "Leonardo Collado Torres" <lcollado at jhu.edu>
>> >> To: bioc-devel at r-project.org
>> >> Sent: Thursday, October 15, 2015 8:47:40 AM
>> >> Subject: [Bioc-devel] Github Bioconductor-mirror not updating for
>> >> repo's      that still had bridges?
>> >>
>> >> Hi,
>> >>
>> >> I noticed that my repositories that had an active git-svn bridge seem
>> >> to not be updated in Bioconductor-mirror.
>> >>
>> >> For example, you can see that the bridge was still working for
>> >> derfinder with this commit:
>> >>
>> >> https://github.com/lcolladotor/derfinder/commit/a82112f777415414c234623af15e0c2088c2eea7
>> >> but that commit is not at
>> >> https://github.com/Bioconductor-mirror/derfinder/commits/master yet.
>> >> It's on svn though.
>> >>
>> >> Cheers,
>> >> Leo
>> >>
>> >> Leonardo Collado Torres, PhD Candidate
>> >> Department of Biostatistics
>> >> Johns Hopkins University
>> >> Bloomberg School of Public Health
>> >> Website: http://lcolladotor.github.io/about.html
>> >>
>> >> _______________________________________________
>> >> Bioc-devel at r-project.org mailing list
>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> >>
>>
>> _______________________________________________
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>
>



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