[Bioc-devel] ideas for ScanBamParam filters

[Michael Lawrence]

I see, thanks. Was just using an old version (wrong laptop), so missed the
mapqFilter().

On Fri, Oct 16, 2015 at 5:10 AM, Morgan, Martin <
Martin.Morgan at roswellpark.org> wrote:

>
>
> > -----Original Message-----
> > From: Bioc-devel [mailto:bioc-devel-bounces at r-project.org] On Behalf Of
> > Michael Lawrence
> > Sent: Friday, October 16, 2015 7:56 AM
> > To: bioc-devel at r-project.org
> > Subject: [Bioc-devel] ideas for ScanBamParam filters
> >
> > Maybe I just missed these, but these are a couple of things we could
> filter
> > by, in addition to what's there already:
> >
> > - Minimum MAPQ
> > - Read group
>
> see tagFilter and mapqFilter args to ScanBamParam. I don't know how
> heavily used these are so bugs welcome.
>
> Martin
>
> >
> > The first is mostly for convenience, but the second should also benefit
> > performance.
> >
> > I can help implement this, but wanted to make sure this is a reasonable
> > approach.
> >
> > Michael
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
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