[Bioc-devel] ideas for ScanBamParam filters

[Morgan, Martin]

> -----Original Message-----
> From: Bioc-devel [mailto:bioc-devel-bounces at r-project.org] On Behalf Of
> Michael Lawrence
> Sent: Friday, October 16, 2015 7:56 AM
> To: bioc-devel at r-project.org
> Subject: [Bioc-devel] ideas for ScanBamParam filters
> 
> Maybe I just missed these, but these are a couple of things we could filter
> by, in addition to what's there already:
> 
> - Minimum MAPQ
> - Read group

see tagFilter and mapqFilter args to ScanBamParam. I don't know how heavily used these are so bugs welcome.

Martin

> 
> The first is mostly for convenience, but the second should also benefit
> performance.
> 
> I can help implement this, but wanted to make sure this is a reasonable
> approach.
> 
> Michael
> 
> 	[[alternative HTML version deleted]]
> 
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