[Bioc-devel] error in stable AnnotationHub

Kasper Daniel Hansen kasperdanielhansen at gmail.com
Sun Oct 11 05:03:44 CEST 2015


Using Bioconductor 3.1 and the following code

library(AnnotationHub)
ah <- AnnotationHub()
ah[["AH28868"]]

I get an error like

retrieving 1 resources
  |======================================================================|
100%
Error in value[[3L]](cond) :
  failed to load hub resource ‘E003-DNase.hotspot.broad.bed.gz’ of class
    EpigenomeRoadmapFile; reason: length of 'chrom' greater than length
    of 'ranges'
In addition: There were 50 or more warnings (use warnings() to see the
first 50)

Best,
Kasper

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