[Bioc-devel] Minor (impossible to trigger?) bug in assay, SummarizedExperiment0, character-method

Morgan, Martin Martin.Morgan at roswellpark.org
Sun Oct 11 00:11:42 CEST 2015


And also in the replacement method a little further in the file. Thanks, Pete, fixed in 0.3.11
________________________________________
From: Bioc-devel [bioc-devel-bounces at r-project.org] on behalf of Peter Hickey [peter.hickey at gmail.com]
Sent: Friday, October 09, 2015 9:29 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Minor (impossible to trigger?) bug in assay,      SummarizedExperiment0, character-method

See https://github.com/Bioconductor-mirror/SummarizedExperiment/blob/744eea36e9f8ee4daea00baa7a1d9eea68d957ca/R/SummarizedExperiment0-class.R#L210

I think it should be 'i = assayNames(x)[1]'.

I say it is impossible to trigger because I don't think this method is
ever called since if 'i' is missing the
assay,SummarizedExperiment0,missing-method will be called, but I point
it out in case I'm mistaken.

Cheers,
Pete

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