October 2006 Archives by thread
Starting: Sun Oct 1 01:30:12 CEST 2006
Ending: Tue Oct 31 19:20:12 CET 2006
Messages: 286
- [BioC] Error message: no package 'file5f906952' was found
Wonjong Moon
- [BioC] justPlier outputs negative values
burak kutlu
- [BioC] font size problem
marco fabbri
- [BioC] Single Channel Approach for Agilent Arrays
Gaj Stan (BIGCAT)
- [BioC] justPlier outputs negative values
Alvord, Greg (DMS) [Contr]
- [BioC] Regarding error while normalizing using "loess" method
Ganiraju Manyam
- [BioC] Limma and Quantarray files
Alessio Venier
- [BioC] Question about "kidpack" installation
James W. MacDonald
- [BioC] Question about "kidpack" installation
Martin Morgan
- [BioC] probe level annotation
Shi, Tao
- [BioC] probe level annotation
Shi, Tao
- [BioC] probe level annotation
Shi, Tao
- [BioC] fedora core 5 x86_64 rpm extras
D.Enrique ESCOBAR ESPINOZA
- [BioC] Single Channel Approach for Agilent Arrays
Naomi Altman
- [BioC] Affy genechips: probes many times
Saroj Mohapatra
- [BioC] combining different type affy chip data
Yanqin Yang
- [BioC] boxplot of MM data and normalization
Shi, Tao
- [BioC] boxplot of MM data and normalization
Shi, Tao
- [BioC] globaltest errors
Tarun Nayar
- [BioC] Having trouble in using marray
Joo Sang Lee
- [BioC] Limma and Quantarray files
Gavin Kelly
- [BioC] Limma and Quantarray files
Gordon K Smyth
- [BioC] xval
mpg33 at drexel.edu
- [BioC] xval
Stephen Henderson
- [BioC] Error in xval: No Direct or Inherited Method for this call
mpg33 at drexel.edu
- [BioC] limma user's guide example
Giovanni Coppola
- [BioC] BioC 1.9 is released!
Seth Falcon
- [BioC] question about SAM R package
James Anderson
- [BioC] Custom arrays
Ho, Anne
- [BioC] [SAGEnhaft] This library does all post analysis on SAGE or is need another software for to do?
Marcelo Luiz de Laia
- [BioC] Normalization quality
alex lam (RI)
- [BioC] globaltest: pairwise design?
Goeman, J.J. (MSTAT)
- [BioC] Normalisation method worries
J.delasHeras at ed.ac.uk
- [BioC] Limma question: positive M values means upregulated in 'Treated' in this case?
Wonjong Moon
- [BioC] Checking qc
alex lam (RI)
- [BioC] ChipInspector
marco fabbri
- [BioC] Affymetrix Poly-A Controls
Ann Hess
- [BioC] Affymetrix exon arrays?
Steven McKinney
- [BioC] Limma question: positive M values means upregulated in 'Treated' in this case?
Jenny Drnevich
- [BioC] How to calculate multivariate norm cdf?
James Anderson
- [BioC] gcrma and combineAffyBatch
Lo, Ken
- [BioC] gcrma and combineAffyBatch
Lo, Ken
- [BioC] annotation data packages in BioC1.9
Nianhua Li
- [BioC] bioMart 1.6.3 missing mysql=TRUE in useMart
mkeehan at lic.co.nz
- [BioC] Simple affymetrix question (treated vs non-treated)
Wonjong Moon
- [BioC] Separate Normalizations and expression plotting
Lana Schaffer
- [BioC] DSC final call and scholarships
Paul Murrell
- [BioC] Limma and Quantarray files
Alessio Venier
- [BioC] What to do with multiple probes in GSEA?
Dick Beyer
- [BioC] Custom CDFs from U mich for GeneChip Analysis
Lo, Ken
- [BioC] Custom CDFs from U mich for GeneChip Analysis
James W. MacDonald
- [BioC] MergeMaid version
SKALKO at clinic.ub.es
- [BioC] problem updating packages OCPlus and RSNper
Kimpel, Mark William
- [BioC] cDNA array with 2 levels of duplication
Noah Cohen
- [BioC] Limma - error when using duplicateCorrelation
Jakob Hedegaard
- [BioC] convert .DAT to .CEL
Ana Sofia Figueiredo
- [BioC] cDNA array with 2 levels of duplication
Gordon K Smyth
- [BioC] Limma - error when using duplicateCorrelation
Gordon K Smyth
- [BioC] Limma - plotMA3by2 & imageplot3by2 - as -pdf?
Jakob Hedegaard
- [BioC] tcltk problem under Linux (both 32 and 64 bits)
Groot, Philip de
- [BioC] retrieving genomic sequences with biomaRt
J.delasHeras at ed.ac.uk
- [BioC] Limma nestedF
noel0925 at sbcglobal.net
- [BioC] makePlatformDesign error
Richard Williams IV
- [BioC] limma: decideTests, which option to choose and nestedF pvalues
noel0925 at sbcglobal.net
- [BioC] Limma - error when using duplicateCorrelation
Gordon K Smyth
- [BioC] limma: decideTests, which option to choose and nestedF pvalues
noel0925 at sbcglobal.net
- [BioC] Limma - plotMA3by2 & imageplot3by2 - as -pdf?
Gordon Smyth
- [BioC] Limma nestedF
James W. MacDonald
- [BioC] create probe file from CDF?
Lo, Ken
- [BioC] FW: create probe file from CDF?
Lo, Ken
- [BioC] R/BioC workshops in Southern California
Thomas Girke
- [BioC] hs133phsentrezg metadata
De Bondt, An-7114 [PRDBE]
- [BioC] ath1121501 and GO
Martin Olivier
- [BioC] matchrpobes and HGU95A mismatch
Ernest Turro
- [BioC] CyberT versus Moderated t Comparison
Ann Hess
- [BioC] Mismatch probe handling for exon arrays
Steven McKinney
- [BioC] array CGH
Lisa Luo
- [BioC] help with ath1121501
Martin Olivier
- [BioC] hs133phsentrezg metadata
James W. MacDonald
- [BioC] help with ath1121501
John Zhang
- [BioC] A question about reading FACS files using the rflowcyt package
Johan Lindberg
- [BioC] hs133phsentrezg metadata
De Bondt, An-7114 [PRDBE]
- [BioC] 3 factors with Limma.
Sharon
- [BioC] Normalisation GCRMA Error
Nicolas Servant
- [BioC] Simple affymetrix question (treated vs non-treated)
Wonjong Moon
- [BioC] Spatial Correction
Justin Borevitz
- [BioC] Spatial Correction
Matthew Lyon
- [BioC] ECCB 06: Call for Late-Breaking Results
Hershel Safer
- [BioC] hs133phsentrezg metadata
Manhong Dai
- [BioC] Illumina Data transformation and Normalization
Simon Lin
- [BioC] aCGH and Affymetrix
Di Wu
- [BioC] Using GO functions without using LocusLink mappings
Khan, Anar
- [BioC] A question on GO annotations
Narinder Singh Sahni
- [BioC] syncLocalLibList in BioC 1.8 reposTools
Kimpel, Mark William
- [BioC] ciona cdf environment
Karen Vranizan
- [BioC] aCGH and Affymetrix
Di Wu
- [BioC] problem with hyperGTest and ath1121501?
Martin Olivier
- [BioC] How to use snapCGH with Nimblegen data
Romain Desprat
- [BioC] problem with hyperGTest and ath1121501?
Nianhua Li
- [BioC] beadarray example data problem
Keith Satterley
- [BioC] Designing a model matrix in limma for 4 conditions x 2 colors
Matthew Vaughn
- [BioC] How to adjust the power.t.test R function to reflect different experimental designs?
Nadia Messerschmidt
- [BioC] qqplot: theoretical Quantiles
Mohammad Esad-Djou
- [BioC] qqplot: theoretical Quantiles
shahrgol at web.de
- [BioC] OFF TOPIC How measures is more appropriated to statistical analysis?
Marcelo Luiz de Laia
- [BioC] missing values limma question
lee
- [BioC] sensitivity of maxT correction
A S
- [BioC] Downloading data only once when building many annotation packages with AnnBuilder
David Weiss
- [BioC] Using aggregators
Craddock, Richard C. (CDC/CCID/NCZVED) (CTR)
- [BioC] Affy probeset annotations
Karen Vranizan
- [BioC] Assistance: mouse4302cdf installation
Alexander E. Lipka
- [BioC] job ad: position in UCSF Biostatistics
Fridlyand, Jane
- [BioC] Assistance: mouse4302cdf installation
Melissa Paczkowski
- [BioC] Lodplot problem
Daniel Brewer
- [BioC] lmFit(eset,design) error message
Benjamin Otto
- [BioC] gcrma on PM-only Affy data
Karen Vranizan
- [BioC] SAM question (how to calculate the fudge term s0)
James Anderson
- [BioC] problems reading Illumina files using BeadExplorer
Vitalina Komashko
- [BioC] advice on absent present filtering needed
Kimpel, Mark William
- [BioC] Mirror configuration to install from local files with getBioC/biocLite
Thierry Sengstag
- [BioC] ExpressionSet object to lmFit
Gordon Smyth
- [BioC] R plug-ins for Genespring
Margaret Gardiner-Garden
- [BioC] Mirror configuration to install from local files with getBioC/biocLite
lidaof
- [BioC] biomaRt: retrieve total chromosome lengths
De Bondt, An-7114 [PRDBE]
- [BioC] signals from different cell types
Lewin Eisele
- [BioC] Computing a diference of 2 differences from a CpG Island experiment using LimmaGUI
Richard Friedman
- [BioC] Create a vector of individual probes to remove from a CDF file
Dana Wohlbach
- [BioC] [Bioc-devel] I will succeed (hopefully) the installation of Bioconductor 2.0
Francois Pepin
- [BioC] Is GNF1H gene chip package available
Srinivasan Ramachandran
- [BioC] Computing Copy Number from Affy 500K SNP Chips
Nicholas D. Socci
- [BioC] Creating a .Rprofile
Melissa Paczkowski
- [BioC] RBGL compile error
YGC
- [BioC] Bioconductor Digest, Vol 44, Issue 28
Manhong Dai
- [BioC] 2 questions on Normalzation with LIMMAGUI
Richard Friedman
- [BioC] Microarray analysis and limma
john seers (IFR)
- [BioC] problems with Affy vignette and affybatch objects
Jenny Drnevich
- [BioC] Golub (1999) Esets
McGee, Monnie
- [BioC] biomaRt: retrieve total chromosome lengths
De Bondt, An-7114 [PRDBE]
- [BioC] F-test vs.T-test-on-differences
Benjamin Otto
- [BioC] Nci-60 gene expression correlation coefficients
John Morrow
Last message date:
Tue Oct 31 19:20:12 CET 2006
Archived on: Wed Nov 1 00:01:55 CET 2006
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