[BioC] Bioconductor Digest, Vol 44, Issue 28
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Mon Oct 30 16:51:57 CET 2006
Looks like "rejectedprobesat" should be "rejectedprobeset" to me - typo in the function?
From: bioconductor-bounces at stat.math.ethz.ch on behalf of Manhong Dai
Sent: Mon 30/10/2006 2:15 PM
To: bioconductor at stat.math.ethz.ch; djsomers at wisc.edu
Subject: Re: [BioC] Bioconductor Digest, Vol 44, Issue 28
We ever released an R package that can remove probes from cdf
environment, which is at
Some peoples have tested it and it seems there is no glitch.
> I am trying to remove individual probes from analysis by using code
> posted by Ariel Chernomoretz and modified by Jenny Drnevich. I have
> a list of individual probes that I would like to remove in a tab-
> delimited text file (called rejectedprobes) and the file is in my
> working directory. The columns in the rejectedprobes file correspond
> to and are named exactly as in the CDF file. However, when I try to
> use RemoveProbes
> (listOutProbes="rejectedprobes",listOutProbeSets=NULL, cleancdf) as
> directed in the original instructions, it reports the error:
> Error in get(x, envir, mode, inherits) : variable "rejectedprobesat"
> was not found
> I am wondering if anyone can give me some clues as to ways to fix
> this problem. If you need more information about the problem I'm
> experiencing, please let me know.
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> End of Bioconductor Digest, Vol 44, Issue 28
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor