[BioC] Bioconductor Digest, Vol 44, Issue 28

[michael watson (IAH-C)]

Looks like "rejectedprobesat" should be "rejectedprobeset" to me - typo in the function?

________________________________

From: bioconductor-bounces at stat.math.ethz.ch on behalf of Manhong Dai
Sent: Mon 30/10/2006 2:15 PM
To: bioconductor at stat.math.ethz.ch; djsomers at wisc.edu
Subject: Re: [BioC] Bioconductor Digest, Vol 44, Issue 28



Hi Dana,

        We ever released an R package that can remove probes from cdf
environment, which is at
http://arrayanalysis.mbni.med.umich.edu/MBNIUM.html#ProbeFilter

        Some peoples have tested it and it seems there is no glitch.

Best,
Manhong Dai

> Hello,
> I am trying to remove individual probes from analysis by using code 
> posted by Ariel Chernomoretz and modified by Jenny Drnevich.   I have 
> a list of individual probes that I would like to remove in a tab-
> delimited text file (called rejectedprobes) and the file is in my 
> working directory.  The columns in the rejectedprobes file correspond 
> to and are named exactly as in the CDF file.  However, when I try to 
> use RemoveProbes
> (listOutProbes="rejectedprobes",listOutProbeSets=NULL, cleancdf) as 
> directed in the original instructions, it reports the error:
> Error in get(x, envir, mode, inherits) : variable "rejectedprobesat" 
> was not found
> I am wondering if anyone can give me some clues as to ways to fix 
> this problem.  If you need more information about the problem I'm 
> experiencing, please let me know.
>
> Thanks,
> Dana
>
>
>
> ------------------------------
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
> End of Bioconductor Digest, Vol 44, Issue 28
> ********************************************

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor