[BioC] problem updating packages OCPlus and RSNper

[Herve Pages]

Hi Mark,

There was a file permission issue on our server. It should be
fixed now. Thanks for reporting this and sorry for the
inconvenience!

Best,
H.

Kimpel, Mark William wrote:
> I have recently migrated to R 2.4.0 and BioC 1.9  I cannot update packages OCPlus and RSNper from within R or from the web interface. Below are the errors I get and my sessionInfo()
>
> Welcome to Bioconductor
>
>     Vignettes contain introductory material. To view, type
>     'openVignette()' or start with 'help(Biobase)'. For details
>     on reading vignettes, see the openVignette help page.
>
> OCplus :
>  Version 1.7.0 installed in C:/PROGRA~1/R/R-24~1.0/library 
>  Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
> Update (y/N/c)?  y
> RSNPper :
>  Version 1.6.3 installed in C:/PROGRA~1/R/R-24~1.0/library 
>  Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
> Update (y/N/c)?  y
> trying URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/OCplus_1.8.0.zip'
> Error in download.file(url, destfile, method, mode = "wb") : 
>         cannot open URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/OCplus_1.8.0.zip'
> In addition: Warning messages:
> 1: Do not know which element of 'lib' to install dependencies into
> skipping dependencies in: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl,  
> 2: cannot open: HTTP status was '403 Forbidden' 
> Warning in download.packages(pkgs, destdir = tmpd, available = available,  : 
>          download of package 'OCplus' failed
> trying URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RSNPper_1.8.0.zip'
> Error in download.file(url, destfile, method, mode = "wb") : 
>         cannot open URL 'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RSNPper_1.8.0.zip'
> In addition: Warning message:
> cannot open: HTTP status was '403 Forbidden' 
> Warning in download.packages(pkgs, destdir = tmpd, available = available,  : 
>          download of package 'RSNPper' failed
> Loading required package: affy
> Loading required package: affyio
> [1] TRUE
> Loading required package: limma
> [1] TRUE
>   
>> sessionInfo()
>>     
> R version 2.4.0 (2006-10-03) 
> i386-pc-mingw32 
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] "stats"     "graphics"  "grDevices" "datasets"  "utils"     "methods"   "tools"     "base"     
>
> other attached packages:
>    limma     affy   affyio  Biobase 
>  "2.9.1" "1.12.0"  "1.2.0" "1.12.0"
>
>
> >From the web interface (example is RSNper but get same message with OCPlus):
>
> http://www.bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RSNPper_1.8.0.zip
>
> Access forbidden!
>
> You don't have permission to access the requested object. It is either read-protected or not readable by the server.
>
> If you think this is a server error, please contact the webmaster.
> Error 403
> www.bioconductor.org
> Mon Oct 9 08:46:36 2006
> Apache/2.0.49 (Linux/SuSE)
>
> Mark W. Kimpel MD 
>
>  
> Official Business Address:
>  
> Department of Psychiatry
> Indiana University School of Medicine
> PR M116
> Institute of Psychiatric Research
> 791 Union Drive
> Indianapolis, IN 46202
>  
> Preferred Mailing Address:
>  
> 15032 Hunter Court
> Westfield, IN  46074
>  
> (317) 490-5129 Work, & Mobile
>  
> (317) 663-0513 Home (no voice mail please)
> 1-(317)-536-2730 FAX
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>