[BioC] problem updating packages OCPlus and RSNper

[Kimpel, Mark William]

Herve,

Problem solved. Thanks!

mark

Mark W. Kimpel MD 

 

(317) 490-5129 Work, & Mobile

 

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-----Original Message-----
From: Herve Pages [mailto:hpages at fhcrc.org] 
Sent: Monday, October 09, 2006 3:41 PM
To: Kimpel, Mark William
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] problem updating packages OCPlus and RSNper

Hi Mark,

There was a file permission issue on our server. It should be
fixed now. Thanks for reporting this and sorry for the
inconvenience!

Best,
H.

Kimpel, Mark William wrote:
> I have recently migrated to R 2.4.0 and BioC 1.9  I cannot update
packages OCPlus and RSNper from within R or from the web interface.
Below are the errors I get and my sessionInfo()
>
> Welcome to Bioconductor
>
>     Vignettes contain introductory material. To view, type
>     'openVignette()' or start with 'help(Biobase)'. For details
>     on reading vignettes, see the openVignette help page.
>
> OCplus :
>  Version 1.7.0 installed in C:/PROGRA~1/R/R-24~1.0/library 
>  Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
> Update (y/N/c)?  y
> RSNPper :
>  Version 1.6.3 installed in C:/PROGRA~1/R/R-24~1.0/library 
>  Version 1.8.0 available at http://bioconductor.org/packages/1.9/bioc
> Update (y/N/c)?  y
> trying URL
'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/OCplu
s_1.8.0.zip'
> Error in download.file(url, destfile, method, mode = "wb") : 
>         cannot open URL
'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/OCplu
s_1.8.0.zip'
> In addition: Warning messages:
> 1: Do not know which element of 'lib' to install dependencies into
> skipping dependencies in: .install.winbinary(pkgs = pkgs, lib = lib,
contriburl = contriburl,  
> 2: cannot open: HTTP status was '403 Forbidden' 
> Warning in download.packages(pkgs, destdir = tmpd, available =
available,  : 
>          download of package 'OCplus' failed
> trying URL
'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RSNPp
er_1.8.0.zip'
> Error in download.file(url, destfile, method, mode = "wb") : 
>         cannot open URL
'http://bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RSNPp
er_1.8.0.zip'
> In addition: Warning message:
> cannot open: HTTP status was '403 Forbidden' 
> Warning in download.packages(pkgs, destdir = tmpd, available =
available,  : 
>          download of package 'RSNPper' failed
> Loading required package: affy
> Loading required package: affyio
> [1] TRUE
> Loading required package: limma
> [1] TRUE
>   
>> sessionInfo()
>>     
> R version 2.4.0 (2006-10-03) 
> i386-pc-mingw32 
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] "stats"     "graphics"  "grDevices" "datasets"  "utils"
"methods"   "tools"     "base"     
>
> other attached packages:
>    limma     affy   affyio  Biobase 
>  "2.9.1" "1.12.0"  "1.2.0" "1.12.0"
>
>
> >From the web interface (example is RSNper but get same message with
OCPlus):
>
>
http://www.bioconductor.org/packages/1.9/bioc/bin/windows/contrib/2.4/RS
NPper_1.8.0.zip
>
> Access forbidden!
>
> You don't have permission to access the requested object. It is either
read-protected or not readable by the server.
>
> If you think this is a server error, please contact the webmaster.
> Error 403
> www.bioconductor.org
> Mon Oct 9 08:46:36 2006
> Apache/2.0.49 (Linux/SuSE)
>
> Mark W. Kimpel MD 
>
>  
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