[BioC] Computing Copy Number from Affy 500K SNP Chips

[Wittner, Ben, Ph.D.]

Have you looked at PLASQ?
http://genome.dfci.harvard.edu/~tlaframb/PLASQ/
I've not used it, and I don't know if it's implemented for the 500K chips, but I
think the theory behind it is nice.
-Ben

> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor-
> bounces at stat.math.ethz.ch] On Behalf Of Nicholas D. Socci
> Sent: Saturday, October 28, 2006 5:11 PM
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] Computing Copy Number from Affy 500K SNP Chips
> 
> What is the status/plans for software to compute copy number (NOT
> genotype) from affy 500K chips in Bioconductor? I know about dChip
> and CNAG but would like a non Windows solution.
> 
> thanks in advance
> 
> nick socci
> 
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