[BioC] problem with hyperGTest and ath1121501?

Seth Falcon sfalcon at fhcrc.org
Fri Oct 20 17:45:40 CEST 2006


I wrote:
> These look like gene symbols.  For Affy chip annotation packages, the
> "primary key" is the probe set ID and that is what needs to be
> specified as geneID when creating the GOHyperGParams object.

And was _wrong_.  Sorry for the confusion, but the geneId should, in
general, be a vector of Entrez Gene IDs.  There are exceptions, such
as when doing an analysis using the YEAST package.  Sorry for the
confusion.

> I will try to add more detail to the documentation

Yes, I'm still planning to do that ;-)

+ seth



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