January 2011 Archives by author

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Starting: Sat Jan 1 15:23:53 CET 2011
Ending: Mon Jan 31 23:35:03 CET 2011
Messages: 413

• [BioC] R: Error running GeneAnswers and Rgraphviz   Manca Marco (PATH)
• [BioC] R: Help with R   Manca Marco (PATH)
• [BioC] odd limma results?   David A.
• [BioC] odd limma results   David A.
• [BioC] beadarray: how to create BeadStudio output after createBeadSummaryData   Cei Abreu-Goodger
• [BioC] RMA in xps does not use HuEx-1_0-st-v2.r2.antigenomic.bgp file. Possible ERROR?   Addiel de Alba
• [BioC] extracting topGO gene ids from result object   Adrian Alexa
• [BioC] topGO sensitive to the order of "interesting" gene ids   Adrian Alexa
• [BioC] Analysing multiple-platform gene expression data   Jordi Altirriba
• [BioC] Analysing multiple-platform gene expression data   Jordi Altirriba
• [BioC] converting probe to gene level   Naomi Altman
• [BioC] DESeq: residuals instead of read counts   Simon Anders
• [BioC] FC calculation in Limma   Simon Anders
• [BioC] question about data analysis of Genechip miRNA   James Anderson
• [BioC] Idea that needs feedback   Radhouane Aniba
• [BioC] Procedure   Radhouane Aniba
• [BioC] Procedure   Radhouane Aniba
• [BioC] In the TranscriptDb object, where do the Entrez Gene IDs come from ?   Arnaud Amzallag, Ph.D
• [BioC] Application of Method of Aryee et al to Illumina methylation Arrays   Martin Aryee
• [BioC] Need to save an aligned read file using ShortRead package   Nazi (Marzieh) Bakhshi
• [BioC] multicore and GRangesList   Cory Barr
• [BioC] find overlap of bed files of different length   Christoph Bartenhagen
• [BioC] 2^3 factorial experiment in limma   Shaheena Bashir
• [BioC] dbWriteTable Failure   Elliot Joel Bernstein
• [BioC] dbWriteTable Failure   Elliot Joel Bernstein
• [BioC] dbWriteTable Failure   Elliot Joel Bernstein
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Eric Cabot
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Eric Cabot
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Eric Cabot
• [BioC] multicore and GRangesList   Stefano Calza
• [BioC] boston course filling up   Vincent Carey
• [BioC] common genes   Vincent Carey
• [BioC] expression set objects   Vincent Carey
• [BioC] Hypergeometric test with Disease Ontology   Vincent Carey
• [BioC] Problem with makeDBPackage for arabidopsis with Refseq identifiers   Marc Carlson
• [BioC] subset ontology from entire GO db using topGO   Marc Carlson
• [BioC] subset ontology from entire GO db using topGO   Marc Carlson
• [BioC] annotate and GenBank Accession ID   Marc Carlson
• [BioC] how could be the genes annotated using bioconductor, whose genelist contatining database is not present in the bioconductor.   Marc Carlson
• [BioC] exonsBy() function from GenomicFeature, preserve transcript names?   Marc Carlson
• [BioC] Analysing multiple-platform gene expression data   Marc Carlson
• [BioC] mirna102Xgaincdf package   Marc Carlson
• [BioC] In the TranscriptDb object, where do the Entrez Gene IDs come from ?   Marc Carlson
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] Problem with affy mas5 on Linux but not Windows...   James Carman
• [BioC] about the quantile imputation   Yanwen Chen
• [BioC] booklet on using R for biomedical statistics   Coghlan, Avril
• [BioC] HTqPCR questions   Kevin R. Coombes
• [BioC] Regarding quantile normalization.   Sean Davis
• [BioC] SRAdb listFastq error   Sean Davis
• [BioC] SRAdb listFastq error   Sean Davis
• [BioC] Procedure   Sean Davis
• [BioC] Difference between Multtest and SAM   Sean Davis
• [BioC] converting probe to gene level   Sean Davis
• [BioC] converting probe to gene level   Sean Davis
• [BioC] expression set objects   Sean Davis
• [BioC] dbWriteTable Failure   Sean Davis
• [BioC] expression set object   Sean Davis
• [BioC] lmfit "No residual degrees of freedom"   Sean Davis
• [BioC] eBayes error   Sean Davis
• [BioC] error under "hclust" for microarray clustering   Sean Davis
• [BioC] Specify supported platforms for a package?   Sean Davis
• [BioC] transformation for illumina methylation beta data prior to input to limma   Sean Davis
• [BioC] function precede() not working with GRanges   Jeremiah Degenhardt
• [BioC] Help expanding limmaUsersGuide section 8.7 to 3x2 factorial   Jenny Drnevich
• [BioC] Help expanding limmaUsersGuide section 8.7 to 3x2 factorial   Jenny Drnevich
• [BioC] Using Limma for common reference and paired samples   Jenny Drnevich
• [BioC] Using Limma for common reference and paired samples   Jenny Drnevich
• [BioC] lumiR produces Expression set, not lumi batch   Pan Du
• [BioC] find overlap of bed files of different length   Duke
• [BioC] find overlap of bed files of different length   Duke
• [BioC] find overlap of bed files of different length   Duke
• [BioC] SRAdb listFastq error   Mark Dunning
• [BioC] About package beadarray   Mark Dunning
• [BioC] Beadarray - problem with BSData object created using 'summarize'   Mark Dunning
• [BioC] Beadarray - problem with BSData object created using 'summarize'   Mark Dunning
• [BioC] beadarray: Error when reading control probe profile with readBeadSummaryData   Mark Dunning
• [BioC] HTqPCR problem   Heidi Dvinge
• [BioC] Post-hoc correction fro htQPCR   Heidi Dvinge
• [BioC] HTqPCR questions   Heidi Dvinge
• [BioC] HTqPCR questions   Heidi Dvinge
• [BioC] HT qPCR - error in scale rank invariant   Heidi Dvinge
• [BioC] HT qPCR - error in scale rank invariant   Heidi Dvinge
• [BioC] HT qPCR - error in scale rank invariant   Heidi Dvinge
• [BioC] dbWriteTable Failure   Dirk Eddelbuettel
• [BioC] dbWriteTable Failure   Dirk Eddelbuettel
• [BioC] A doubt on Volcano Plot   B Enn
• [BioC] annotation for Mouse GE 8x60K   Marco Fabbri
• [BioC] AnnotationDbi error   Marco Fabbri
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Hypergeometric test with Disease Ontology   Gilbert Feng
• [BioC] Cell cycle analysis   Greg Finak
• [BioC] HT qPCR - error in scale rank invariant   Andreia Fonseca
• [BioC] HT qPCR - error in scale rank invariant   Andreia Fonseca
• [BioC] HT qPCR - error in scale rank invariant   Andreia Fonseca
• [BioC] HT qPCR - error in scale rank invariant   Andreia Fonseca
• [BioC] Idea that needs feedback   Rick Frausto
• [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
• [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
• [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
• [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
• [BioC] Application of Method of Aryee et al to Illumina methylation Arrays   Richard Friedman
• [BioC] limma report logFC confidence interval?   Richard Friedman
• [BioC] transformation for illumina methylation beta data prior to input to limma   Richard Friedman
• [BioC] Regarding quantile normalization.   Veerendra GP
• [BioC] Regarding quantile normalization.   Veerendra GP
• [BioC] Regarding quantile normalization.   Veerendra GP
• [BioC] iFlow and current Bioconductor release   Gabriel Nathan Kaufman, Mr
• [BioC] Using annotation package how can I convert the probe > ID's to Gene names.   Budhayash Gautam
• [BioC] how could be the genes annotated using bioconductor, whose genelist contatining database is not present in the bioconductor.   Budhayash Gautam
• [BioC] Analysing multiple-platform gene expression data   Paul Geeleher
• [BioC] Using annotation package how can I convert the probe > ID's to Gene names.   Paul Geeleher
• [BioC] Using annotation package how can I convert the probe > ID's to Gene names.   Paul Geeleher
• [BioC] regarding single colour agilent microarray data   Paul Geeleher
• [BioC] BiomaRt down?   Paul Geeleher
• [BioC] exonsBy() function from GenomicFeature, preserve transcript names?   Paul Geeleher
• [BioC] exonsBy() function from GenomicFeature, preserve transcript names?   Paul Geeleher
• [BioC] Regarding quantile normalization.   Darlene Goldstein
• [BioC] How to select a mirror   Pedro Gomez-Fabre
• [BioC] How to select a mirror   Pedro Gomez-Fabre
• [BioC] names of edges in graph classes   Nishant Gopalakrishnan
• [BioC] Two-way ANOVA with multtest's MTP/EBMTP   Neil Gray
• [BioC] Two-way ANOVA with multtest's MTP/EBMTP   Neil Gray
• [BioC] question about get a summary gene expression information from the probe set associated with one specific gene   Xiaowei Guan
• [BioC] how to merge gene expression and arrayCGH matched dataset?   Xiaowei Guan
• [BioC] annotate and GenBank Accession ID   Thomas Hampton
• [BioC] lumiR produces Expression set, not lumi batch   Thomas Hampton
• [BioC] function precede() not working with GRanges   Kasper Daniel Hansen
• [BioC] bug report for GenomicRanges::findOverlaps   Kasper Daniel Hansen
• [BioC] expression set object for metaanalysis   Kasper Daniel Hansen
• [BioC] FC calculation in Limma   Kasper Daniel Hansen
• [BioC] FC calculation in Limma   Kasper Daniel Hansen
• [BioC] find overlap of bed files of different length   Kasper Daniel Hansen
• [BioC] ChIPpeakAnno question   Ron Hart
• [BioC] question about data analysis of Genechip miRNA   Hooiveld, Guido
• [BioC] cdf.file for Affymetrix Rat Gene 1.1 ST Array Plate   Hooiveld, Guido
• [BioC] GCRMA: feature request   Hooiveld, Guido
• [BioC] mirna102Xgaincdf package   Hooiveld, Guido
• [BioC] Read vector nti sequences   Eric Hu
• [BioC] Problem getting the exact ProbeNames   Wolfgang Huber
• [BioC] Cell cycle analysis   Wolfgang Huber
• [BioC] topGO sensitive to the order of "interesting" gene ids   Wolfgang Huber
• [BioC] What's the best way to make svg device on Windows available   Wolfgang Huber
• [BioC] Cell cycle analysis   Annette M Hynes
• [BioC] Cell cycle analysis   Annette M Hynes
• [BioC] common genes   Peevi Ijkl
• [BioC] subsets   Peevi Ijkl
• [BioC] Difference between Multtest and SAM   Peevi Ijkl
• [BioC] meta-analysis   Peevi Ijkl
• [BioC] meta-analysis   Peevi Ijkl
• [BioC] expression set objects   Peevi Ijkl
• [BioC] expression set objects   Peevi Ijkl
• [BioC] expression set object   Peevi Ijkl
• [BioC] expression set object for metaanalysis   Peevi Ijkl
• [BioC] BiomaRt down?   Michael Imbeault
• [BioC] two color time course analysis   Kachroo, Priyanka
• [BioC] Paired t-test query   Kachroo, Priyanka
• [BioC] beadarray: Error when reading control probe profile with readBeadSummaryData   Moritz Kebschull
• [BioC] Job: Biostatistics/Bioinformatics, University of Cambridge   Krys Kelly
• [BioC] RNA-seq   Sridhara Gupta Kunjeti
• [BioC] RNA-seq   Sridhara Gupta Kunjeti
• [BioC] RNA-seq   Sridhara Gupta Kunjeti
• [BioC] edgeR - expressen between genes   Sridhara Gupta Kunjeti
• [BioC] edgeR - expressen between genes   Sridhara Gupta Kunjeti
• [BioC] Problem with makeDBPackage for arabidopsis with Refseq identifiers   Asta Laiho
• [BioC] DESeq: residuals instead of read counts   Tuuli Lappalainen
• [BioC] function precede() not working with GRanges   Michael Lawrence
• [BioC] function precede() not working with GRanges   Michael Lawrence
• [BioC] multicore and GRangesList   Michael Lawrence
• [BioC] function precede() not working with GRanges   Michael Lawrence
• [BioC] function precede() not working with GRanges   Michael Lawrence
• [BioC] function precede() not working with GRanges   Michael Lawrence
• [BioC] What's the best way to make svg device on Windows available   Michael Lawrence
• [BioC] What's the best way to make svg device on Windows available   Michael Lawrence
• [BioC] Bioinformatics jobs -HT sequencing and more   Paul Leo
• [BioC] subsets   Steve Lianoglou
• [BioC] multicore and GRangesList   Steve Lianoglou
• [BioC] multicore and GRangesList   Steve Lianoglou
• [BioC] function precede() not working with GRanges   Steve Lianoglou
• [BioC] function precede() not working with GRanges   Steve Lianoglou
• [BioC] meta-analysis   Steve Lianoglou
• [BioC] meta-analysis   Steve Lianoglou
• [BioC] meta-analysis   Steve Lianoglou
• [BioC] how could be the genes annotated using bioconductor, whose genelist contatining database is not present in the bioconductor.   Steve Lianoglou
• [BioC] genetraffic?   Steve Lianoglou
• [BioC] Oligo properties calculator   Steven Lockton
• [BioC] Paired t-test query   James MacDonald
• [BioC] clustering genes in GO categories   James MacDonald
• [BioC] Newbie question   James MacDonald
• [BioC] mirna102Xgaincdf package   James MacDonald
• [BioC] question about get a summary gene expression information from the probe set associated with one specific gene   James W. MacDonald
• [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
• [BioC] [BioC} Multiple testing correction   James W. MacDonald
• [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
• [BioC] Making median same for each sample   James W. MacDonald
• [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
• [BioC] odd limma results?   James W. MacDonald
• [BioC] Problem getting the exact ProbeNames   James W. MacDonald
• [BioC] clustering genes in GO categories   James W. MacDonald
• [BioC] expression set object for metaanalysis   James W. MacDonald
• [BioC] Two-way ANOVA with multtest's MTP/EBMTP   James W. MacDonald
• [BioC] A doubt on Volcano Plot   James W. MacDonald
• [BioC] Two-way ANOVA with multtest's MTP/EBMTP   James W. MacDonald
• [BioC] clustering genes in GO categories   James W. MacDonald
• [BioC] error under "hclust" for microarray clustering   James W. MacDonald
• [BioC] Problem with affy mas5 on Linux but not Windows...   James W. MacDonald
• [BioC] Problem with affy mas5 on Linux but not Windows...   James W. MacDonald
• [BioC] Problem with affy mas5 on Linux but not Windows...   James W. MacDonald
• [BioC] Problem with affy mas5 on Linux but not Windows...   James W. MacDonald
• [BioC] Problem with affy mas5 on Linux but not Windows...   James W. MacDonald
• [BioC] Possible issue with detection p-values in Lumi package   Jovana Maksimovic
• [BioC] Analysing multiple-platform gene expression data   Kauer Max
• [BioC] Analysing multiple-platform gene expression data   Kauer Max
• [BioC] Analysing multiple-platform gene expression data   Matthew McCall
• [BioC] Analysing multiple-platform gene expression data   Matthew McCall
• [BioC] Problem with EBImage installation on windows 7   Evan Misshula
• [BioC] function precede() not working with GRanges   Martin Morgan
• [BioC] function precede() not working with GRanges   Martin Morgan
• [BioC] [BioC} Multiple testing correction   Martin Morgan
• [BioC] multicore and GRangesList   Martin Morgan
• [BioC] dbWriteTable Failure   Martin Morgan
• [BioC] function precede() not working with GRanges   Martin Morgan
• [BioC] dbWriteTable Failure   Martin Morgan
• [BioC] dbWriteTable Failure   Martin Morgan
• [BioC] Bioc course: Advanced R Programming, 17-18 Feb, Seattle   Martin Morgan
• [BioC] Convert MA to exprSet   Martin Morgan
• [BioC] A question about ShortRead_1.8.2.tar.gz.   Martin Morgan
• [BioC] Help with R   Martin Morgan
• [BioC] clustering genes in GO categories   Martin Morgan
• [BioC] Problem with EBImage installation on windows 7   Martin Morgan
• [BioC] GeneSetCollection with mogene10sttranscriptcluster   Martin Morgan
• [BioC] Problem with affy mas5 on Linux but not Windows...   Martin Morgan
• [BioC] Problem with affy mas5 on Linux but not Windows...   Martin Morgan
• [BioC] [Bioc-devel] Specify supported platforms for a package?   Martin Morgan
• [BioC] Problems with affy on Ubuntu 10.10: "extended" option in sub/R missing   Martin Morgan
• [BioC] Problems with affy on Ubuntu 10.10: "extended" option in sub/R missing   Martin Morgan
• [BioC] find overlap of bed files of different length   Martin Morgan
• [BioC] Need to save an aligned read file using ShortRead package   Martin Morgan
• [BioC] Hypergeometric test with Disease Ontology   Ted Morrow
• [BioC] Hypergeometric test with Disease Ontology   Ted Morrow
• [BioC] Hypergeometric test with Disease Ontology   Ted Morrow
• [BioC] Hypergeometric test with Disease Ontology   Ted Morrow
• [BioC] Hypergeometric test with Disease Ontology   Ted Morrow
• [BioC] dbWriteTable Failure   Tomoaki NISHIYAMA
• [BioC] [Bioc-devel] Specify supported platforms for a package?   Steffen Neumann
• [BioC] RE : RE : maping SNPs   Simon Noël
• [BioC] RE : RE : RE : maping SNPs   Simon Noël
• [BioC] RE : RE : RE : RE : maping SNPs   Simon Noël
• [BioC] AgiMicroRna problem   Paulo Nuin
• [BioC] RE : RE : maping SNPs   Valerie Obenchain
• [BioC] RE : RE : maping SNPs   Valerie Obenchain
• [BioC] RE : RE : RE : maping SNPs   Hervé Pagès
• [BioC] function precede() not working with GRanges   Hervé Pagès
• [BioC] function precede() not working with GRanges   Hervé Pagès
• [BioC] function precede() not working with GRanges   Hervé Pagès
• [BioC] [Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions   Hervé Pagès
• [BioC] RE : RE : RE : RE : maping SNPs   Hervé Pagès
• [BioC] bug report for GenomicRanges::findOverlaps   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] dbWriteTable Failure   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] bug report for GenomicRanges::findOverlaps   Hervé Pagès
• [BioC] BSgenome package for Stickleback   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] forge BSgenome data package   Hervé Pagès
• [BioC] About package beadarray   Anand Patel
• [BioC] About package beadarray   Anand Patel
• [BioC] [BioC} Multiple testing correction   Lucia Peixoto
• [BioC] [BioC} Multiple testing correction   Lucia Peixoto
• [BioC] RmiR: mapping miRNA to probe_id for Affy mogene10st   Mary Putt
• [BioC] GeneSetCollection with mogene10sttranscriptcluster   Mary Putt
• [BioC] GeneSetCollection with mogene10sttranscriptcluster   Mary Putt
• [BioC] GeneSetCollection with mogene10sttranscriptcluster solution   Mary Putt
• [BioC] extracting topGO gene ids from result object   Paul Rigor
• [BioC] subset ontology from entire GO db using topGO   Paul Rigor
• [BioC] subset ontology terms from entire GO db using topGO   Paul Rigor
• [BioC] subset ontology from entire GO db using topGO   Paul Rigor
• [BioC] subset ontology from entire GO db using topGO   Paul Rigor
• [BioC] topGO sensitive to the order of "interesting" gene ids   Paul Rigor
• [BioC] topGO sensitive to the order of "interesting" gene ids   Paul Rigor
• [BioC] topGO sensitive to the order of "interesting" gene ids   Paul Rigor
• [BioC] RNA-seq   Mark Robinson
• [BioC] plotSmear() function in edgeR   Mark Robinson
• [BioC] RNA-seq   Mark Robinson
• [BioC] edgeR calcNormFactors NaN   Mark Robinson
• [BioC] edgeR - expressen between genes   Mark Robinson
• [BioC] Hypergeometric test with Disease Ontology   Peter Robinson
• [BioC] Hypergeometric test with Disease Ontology   Peter Robinson
• [BioC] edgeR calcNormFactors NaN   Marina Naval Sanchez
• [BioC] FC calculation in Limma   Lana Schaffer
• [BioC] FC calculation in Limma   Lana Schaffer
• [BioC] genetraffic?   Mary Schmidt
• [BioC] limma report logFC confidence interval?   Segal, Corrinne
• [BioC] names of edges in graph classes   Paul Shannon
• [BioC] Using Limma for common reference and paired samples   Sharon
• [BioC] Using Limma for common reference and paired samples   Sharon
• [BioC] forge BSgenome data package   steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] forge BSgenome data package   Steve Shen
• [BioC] Possible issue with detection p-values in Lumi package   Wei Shi
• [BioC] About package beadarray   Wei Shi
• [BioC] converting probe to gene level   Wei Shi
• [BioC] limma report logFC confidence interval?   Fraser Sim
• [BioC] eBayes error   Reema Singh
• [BioC] two color time course analysis   Gordon K Smyth
• [BioC] two color time course analysis   Gordon K Smyth
• [BioC] Paired t-test query   Gordon K Smyth
• [BioC] Question about design in limma   Gordon K Smyth
• [BioC] limma Within Array Normalisation By Controls   Gordon K Smyth
• [BioC] limma Within Array Normalisation By Controls   Gordon K Smyth
• [BioC] GeneSetTest: which statistics and other measures can be used   Gordon K Smyth
• [BioC] limma report logFC confidence interval?   Gordon K Smyth
• [BioC] exporting mas5 data with xps   Addiel U. de Alba Solis
• [BioC] How to get the all CpG sites genome postion for mm9?   Aaron Statham
• [BioC] Beadarray - problem with BSData object created using 'summarize'   Kasia Stepien
• [BioC] Beadarray - problem with BSData object created using 'summarize'   Kasia Stepien
• [BioC] limma Within Array Normalisation By Controls   Dario Strbenac
• [BioC] sorting FASTQ file by ID   Ramzi TEMANNI
• [BioC] [JOB] Bioinformatics Data Analyst (Vienna,AT)   Ido M. Tamir
• [BioC] How to select a mirror   Dan Tenenbaum
• [BioC] A question about ShortRead_1.8.2.tar.gz.   Dan Tenenbaum
• [BioC] A question about ShortRead_1.8.2.tar.gz.   Dan Tenenbaum
• [BioC] Packages for NimbleGen 385K CpG Island Plus Promoter Arrays?   Fabrice Tourre
• [BioC] How to get the all CpG sites genome postion for mm9?   Fabrice Tourre
• [BioC] How to get the all CpG sites genome postion for mm9?   Fabrice Tourre
• [BioC] Help with R   Lin-chiang Tseng
• [BioC] plotSmear() function in edgeR   Umhang, Martin
• [BioC] regarding single colour agilent microarray data   Aniket Vatsya
• [BioC] Problem getting the exact ProbeNames   Karsten Voigt
• [BioC] Problem getting the exact ProbeNames   Karsten Voigt
• [BioC] Problem getting the exact ProbeNames   Karsten Voigt
• [BioC] Convert MA to exprSet   Andrew Wang
• [BioC] GAGE: question about interpretation of "ambiguous" results from geneset analysis   Luo Weijun
• [BioC] GAGE: question about interpretation of "ambiguous" results from geneset analysis   Luo Weijun
• [BioC] Question about design in limma   January Weiner
• [BioC] Time series analysis: how to tell whether one stands out?   January Weiner
• [BioC] Problems with affy on Ubuntu 10.10: "extended" option in sub/R missing   January Weiner
• [BioC] Problems with affy on Ubuntu 10.10: "extended" option in sub/R missing   January Weiner
• [BioC] HTqPCR R Bioconductor question (problem reading SDS files for qPCR)   Alexander Williams
• [BioC] HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)   Alexander Williams
• [BioC] GCRMA: feature request   Zhijin Wu
• [BioC] Specify supported platforms for a package?   Zhang Xian
• [BioC] clustering genes in GO categories   Assa Yeroslaviz
• [BioC] clustering genes in GO categories   Assa Yeroslaviz
• [BioC] clustering genes in GO categories   Assa Yeroslaviz
• [BioC] clustering genes in GO categories   Assa Yeroslaviz
• [BioC] clustering genes in GO categories   Assa Yeroslaviz
• [BioC] mirna102Xgaincdf package   Xiaobin Yuan
• [BioC] mirna102Xgaincdf package   Xiaobin Yuan
• [BioC] Single channel array, limma and imagene   Carla Zammit
• [BioC] Bioconductor Digest, Vol 95, Issue 7   Jack Zhu
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   Zhu, Lihua (Julie)
• [BioC] Regarding to ChIPpeakAnno package   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno question   Zhu, Lihua (Julie)
• [BioC] Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)   Zhu, Lihua (Julie)
• [BioC] Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)   Zhu, Lihua (Julie)
• [BioC] Gene Name annotation   Zhu, Lihua (Julie)
• [BioC] Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)   Zhu, Lihua (Julie)
• [BioC] Gene Name annotation with ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] ChIPpeak Anno RangedData question   Zhu, Lihua (Julie)
• [BioC] Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)   Zhu, Lihua (Julie)
• [BioC] ChIPpeak Anno RangedData question   Zhu, Lihua (Julie)
• [BioC] ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks   Zhu, Lihua (Julie)
• [BioC] error under "hclust" for microarray clustering   avehna
• [BioC] error under "hclust" for microarray clustering   avehna
• [BioC] error under "hclust" for microarray clustering   avehna
• [BioC] GCRMA: feature request   bmb at bmbolstad.com
• [BioC] RMA in xps does not use HuEx-1_0-st-v2.r2.antigenomic.bgp file. Possible ERROR?   cstrato
• [BioC] exporting mas5 data with xps   cstrato
• [BioC] ChIPpeakAnno::getEnrichedGo crashes but I don't know why   elcabot
• [BioC] Post-hoc correction fro htQPCR   alessandro.guffanti at genomnia.com
• [BioC] HTqPCR questions   alessandro.guffanti at genomnia.com
• [BioC] HTqPCR questions   alessandro.guffanti at genomnia.com
• [BioC] Error running GeneAnswers and Rgraphviz   john herbert
• [BioC] Making median same for each sample   viritha kaza
• [BioC] Making median same for each sample   viritha kaza
• [BioC] Cyclic loess   viritha kaza
• [BioC] converting probe to gene level   viritha kaza
• [BioC] converting probe to gene level   viritha kaza
• [BioC] converting probe to gene level   viritha kaza
• [BioC] Concept of cyclic loess   viritha kaza
• [BioC] cdf.file for Affymetrix Rat Gene 1.1 ST Array Plate   korobko
• [BioC] lmfit "No residual degrees of freedom"   David martin
• [BioC] lmfit "No residual degrees of freedom"   David martin
• [BioC] affymetrix annotation   arne.mueller at novartis.com
• [BioC] multicore and GRangesList   arne.mueller at novartis.com
• [BioC] multicore and GRangesList   arne.mueller at novartis.com
• [BioC] Newbie question   quantrum75
• [BioC] GeneSetTest: which statistics and other measures can be used   r_1470
• [BioC] Analysing multiple-platform gene expression data   gabriel teku
• [BioC] Analysing multiple-platform gene expression data   gabriel teku
• [BioC] GCRMA: feature request   bjoern usadel
• [BioC] A question about ShortRead_1.8.2.tar.gz.   xujiabao
• [BioC] [Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions   하오잠 로

Last message date: Mon Jan 31 23:35:03 CET 2011
Archived on: Fri Feb 4 18:46:18 CET 2011

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