[BioC] SRAdb listFastq error

[Mark Dunning]

Hi,

I am hoping to download some Fastq files from the Short Read Archive
and am following the vignette for SRAdb. However, I get an error when
trying the example of using listFastq

>  listFastq("SRA011804", sra_con = sra_con)
Error in curlPerform(curl = curl, .opts = opts, .encoding = .encoding) :
  Server denied you to change to the given directory

I think I have setup the sra_con object correctly

> sra_con
<SQLiteConnection: DBI CON (2626, 2)>
>  dbListFields(sra_con, "study")
 [1] "study_ID"             "study_alias"          "study_accession"
 [4] "study_title"          "study_type"           "study_abstract"
 [7] "center_name"          "center_project_name"  "project_id"
[10] "study_description"    "study_url_link"       "study_entrez_link"
[13] "study_attribute"      "submission_accession" "sradb_updated"
>

Cheers,

Mark


> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.utf8       LC_NUMERIC=C
 [3] LC_TIME=en_GB.utf8        LC_COLLATE=en_GB.utf8
 [5] LC_MONETARY=C             LC_MESSAGES=en_GB.utf8
 [7] LC_PAPER=en_GB.utf8       LC_NAME=C
 [9] LC_ADDRESS=C              LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] SRAdb_1.4.0   graph_1.28.0  RSQLite_0.9-3 DBI_0.2-5

loaded via a namespace (and not attached):
[1] Biobase_2.10.0  GEOquery_2.16.3 RCurl_1.4-3     tools_2.12.0
[5] XML_3.2-0