[BioC] annotate and GenBank Accession ID

[Thomas Hampton]

library(hugene10sttranscriptcluster.db)

 > ls("package:hugene10sttranscriptcluster.db")
[1] "hugene10sttranscriptcluster"
[2] "hugene10sttranscriptclusterACCNUM"
[3] "hugene10sttranscriptclusterALIAS2PROBE"
[4] "hugene10sttranscriptclusterCHR"
[5] "hugene10sttranscriptclusterCHRLENGTHS"
[6] "hugene10sttranscriptclusterCHRLOC"
[7] "hugene10sttranscriptclusterCHRLOCEND"
[8] "hugene10sttranscriptcluster_dbconn"
[9] "hugene10sttranscriptcluster_dbfile"
[10] "hugene10sttranscriptcluster_dbInfo"
[11] "hugene10sttranscriptcluster_dbschema"
[12] "hugene10sttranscriptclusterENSEMBL"
[13] "hugene10sttranscriptclusterENSEMBL2PROBE"
[14] "hugene10sttranscriptclusterENTREZID"
[15] "hugene10sttranscriptclusterENZYME"
[16] "hugene10sttranscriptclusterENZYME2PROBE"
[17] "hugene10sttranscriptclusterGENENAME"
[18] "hugene10sttranscriptclusterGO"
[19] "hugene10sttranscriptclusterGO2ALLPROBES"
[20] "hugene10sttranscriptclusterGO2PROBE"
[21] "hugene10sttranscriptclusterMAP"
[22] "hugene10sttranscriptclusterMAPCOUNTS"
[23] "hugene10sttranscriptclusterOMIM"
[24] "hugene10sttranscriptclusterORGANISM"
[25] "hugene10sttranscriptclusterORGPKG"
[26] "hugene10sttranscriptclusterPATH"
[27] "hugene10sttranscriptclusterPATH2PROBE"
[28] "hugene10sttranscriptclusterPFAM"
[29] "hugene10sttranscriptclusterPMID"
[30] "hugene10sttranscriptclusterPMID2PROBE"
[31] "hugene10sttranscriptclusterPROSITE"
[32] "hugene10sttranscriptclusterREFSEQ"
[33] "hugene10sttranscriptclusterSYMBOL"
[34] "hugene10sttranscriptclusterUNIGENE"
[35] "hugene10sttranscriptclusterUNIPROT"

Above, I note that GeneBank ids are not directly supported for my  
chip. Darn.

I am therefore using an online converter to map a list of GenBank  
accessions to ENTREZ gene ids because it looks tricky to use
the entrezGeneByID function in annotate for a list of IDS.

Ami I missing something?

Best,

Tom