October 2010 Archives by subject
Starting: Fri Oct 1 03:06:47 CEST 2010
Ending: Sat Oct 30 14:56:50 CEST 2010
Messages: 512
- [BioC] (no subject)
Emma Lucas
- [BioC] (no subject)
Marc Carlson
- [BioC] *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
Alberto Goldoni
- [BioC] 64-bit binary of graphviz for R 2.12.0 (x64)
Fraser Sim
- [BioC] 64-bit binary of graphviz for R 2.12.0 (x64)
Fraser Sim
- [BioC] [Bioc-sig-seq] EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value
Mark Robinson
- [BioC] [R] adding environment variables
Henrique Dallazuanna
- [BioC] A story about IRanges::GappedRanges ... how does it end?
Steve Lianoglou
- [BioC] A story about IRanges::GappedRanges ... how does it end?
Michael Lawrence
- [BioC] A story about IRanges::GappedRanges ... how does it end?
Steve Lianoglou
- [BioC] A story about IRanges::GappedRanges ... how does it end?
Michael Lawrence
- [BioC] adding environment variables
Robert M. Flight
- [BioC] adding environment variables
Sean Davis
- [BioC] adding environment variables
Kasper Daniel Hansen
- [BioC] adding environment variables
Martin Morgan
- [BioC] adding environment variables
Robert M. Flight
- [BioC] adding environment variables
Kasper Daniel Hansen
- [BioC] Affy/annaffy question
Achilleas Pitsillides
- [BioC] Affy/annaffy question
James W. MacDonald
- [BioC] affyPara
danieladna
- [BioC] affyPara
Valerie Obenchain
- [BioC] affypara
danieladna
- [BioC] affypara
Valerie Obenchain
- [BioC] affyPara
danieladna
- [BioC] affyPara
Valerie Obenchain
- [BioC] affyPara
Valerie Obenchain
- [BioC] Agi4x44PreProcess - filter.probes function
Neel Aluru
- [BioC] AgiMicroRna problems
Mark Cowley
- [BioC] Aniket Mishra wants to stay in touch on LinkedIn
Aniket Mishra
- [BioC] Aniket Mishra wants to stay in touch on LinkedIn
Aniket Mishra
- [BioC] AnnotatedDataFrame and cbind
Simon Anders
- [BioC] AnnotatedDataFrame and cbind
Vincent Carey
- [BioC] AnnotatedDataFrame and cbind
Simon Anders
- [BioC] Annotation package for affy SNP6.0
Qian Liu
- [BioC] Anyone thinking of expanding rsbml capability of reading SBML versions?
pj dias
- [BioC] Anyone thinking of expanding rsbml capability of reading SBML versions?
Michael Lawrence
- [BioC] Anyone thinking of expanding rsbml capability of reading SBML versions?
pj dias
- [BioC] ArrayExpress: missing cdf environment!
Daniel Rico Rodriguez
- [BioC] ArrayExpress: missing cdf environment!
Wolfgang Huber
- [BioC] ArrayExpress: missing cdf environment!
Daniel Rico Rodriguez
- [BioC] arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
Wolfgang Huber
- [BioC] arrayQualityMetrics not producing all diagnostic plots
James F. Reid
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Martin Morgan
- [BioC] arrayQualityMetrics not producing all diagnostic plots
James F. Reid
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Martin Morgan
- [BioC] arrayQualityMetrics not producing all diagnostic plots
James F. Reid
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Benilton Carvalho
- [BioC] arrayQualityMetrics not producing all diagnostic plots
James F. Reid
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Benilton Carvalho
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Benilton Carvalho
- [BioC] arrayQualityMetrics not producing all diagnostic plots
Wolfgang Huber
- [BioC] arrayQualityMetrics not producing all diagnostic plots
James F. Reid
- [BioC] avereps problem
Benoit Loup
- [BioC] avereps problem
Valerie Obenchain
- [BioC] avereps problem
Gordon K Smyth
- [BioC] avereps problem
Benoit Loup
- [BioC] beadarray error messages with BSData function
Huw Jones
- [BioC] beadarray error messages with BSData function
Mark Cowley
- [BioC] beadarray error messages with BSData function
Mike Smith
- [BioC] beadarray, bash, hulk, excludeBrihtBeadNeighbors, et al -- how to use practically?
Anand Patel
- [BioC] bed file around the TSSs
joseph
- [BioC] bed file around the TSSs
Vincent Carey
- [BioC] bed file around the TSSs
Michael Lawrence
- [BioC] bed file around the TSSs
joseph
- [BioC] bed file around the TSSs
Vincent Carey
- [BioC] Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
John Brehm
- [BioC] Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
Josef Spidlen
- [BioC] Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
Hervé Pagès
- [BioC] Bioconductor
Valerie Obenchain
- [BioC] Bioconductor 2.7 is released
Martin Morgan
- [BioC] Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
Wolfgang Huber
- [BioC] BioMaRt query
René Dreos
- [BioC] BioMaRt query
Kasper Daniel Hansen
- [BioC] BioMaRt query
James W. MacDonald
- [BioC] biomaRt query : inconsistent results for different Attribute set
Md.Mamunur Rashid
- [BioC] biomaRt query : inconsistent results for different Attribute set
Steffen Durinck
- [BioC] Biostrings bug?
arne.mueller at novartis.com
- [BioC] Biostrings bug?
arne.mueller at novartis.com
- [BioC] Biostrings bug?
Hervé Pagès
- [BioC] Biostrings bug?
Hervé Pagès
- [BioC] Bug in set operations over IRanges objects with non-NULL elementMetadata()
Steve Lianoglou
- [BioC] Bug in set operations over IRanges objects with non-NULL elementMetadata()
Steve Lianoglou
- [BioC] Bug in set operations over IRanges objects with non-NULL elementMetadata()
Michael Lawrence
- [BioC] Bug in set operations over IRanges objects with non-NULL elementMetadata()
Michael Lawrence
- [BioC] Bug in set operations over IRanges objects with non-NULL elementMetadata()
Steve Lianoglou
- [BioC] Bug/typo in latest GenomicFeatures (rev 50109)
Steve Lianoglou
- [BioC] Bug/typo in latest GenomicFeatures (rev 50109)
Martin Morgan
- [BioC] Can gene-set data be a data frame for a package in bioconductor
Martin Morgan
- [BioC] Can gene-set data be a data frame for a package in bioconductor
lan gao
- [BioC] caught segfault in arrayQualityMetrics
Laurent Gatto
- [BioC] caught segfault in arrayQualityMetrics
Wolfgang Huber
- [BioC] caught segfault in arrayQualityMetrics
Martin Morgan
- [BioC] caught segfault in arrayQualityMetrics
Laurent Gatto
- [BioC] ChIPpeakAnno
Zhu, Lihua (Julie)
- [BioC] ChIPpeakAnno bug?
Zhu, Lihua (Julie)
- [BioC] clustering of microarray time-series data
avehna
- [BioC] clustering of microarray time-series data
Maciej Jończyk
- [BioC] clustering of microarray time-series data
avehna
- [BioC] Combining two CompressedNormalIRangesList objects doesn't work
Steve Lianoglou
- [BioC] Combining two CompressedNormalIRangesList objects doesn't work
Michael Lawrence
- [BioC] Combining two CompressedNormalIRangesList objects doesn't work
Steve Lianoglou
- [BioC] Combining two CompressedNormalIRangesList objects doesn't work
Steve Lianoglou
- [BioC] Compilation problem RBGL_1.26
Bernt Guldbrandtsen
- [BioC] Compilation problem RBGL_1.26
Vincent Carey
- [BioC] Compilation problem RBGL_1.26
Bernt Guldbrandtsen
- [BioC] Compilation problem RBGL_1.26
Bernt Guldbrandtsen
- [BioC] Course announcement: Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
Joaquin Dopazo
- [BioC] Course: Introduction to R / Bioconductor, Seattle Dec 9 / 10
Martin Morgan
- [BioC] crlmm package and allele-specific CNV with Illumina SNP arrays
Zoppoli, Gabriele (NIH/NCI) [G]
- [BioC] crlmm package and allele-specific CNV with Illumina SNP arrays
Robert Scharpf
- [BioC] Cy5: methylated or unmethylated?
Shi, Tao
- [BioC] Cy5: methylated or unmethylated?
Sean Davis
- [BioC] Cy5: methylated or unmethylated?
Shi, Tao
- [BioC] Cyclic Loess
viritha kaza
- [BioC] Cyclic Loess
viritha kaza
- [BioC] Cyclic Loess
Martin Morgan
- [BioC] Cyclic Loess
viritha kaza
- [BioC] Cyclic Loess
Martin Morgan
- [BioC] Data from GEO in Methylumi
S T
- [BioC] Data from GEO in Methylumi
Sean Davis
- [BioC] Data from GEO in Methylumi
S T
- [BioC] Data from GEO in Methylumi
Tim Triche
- [BioC] Discrepancy in differential expression gene list after intraspot correlation
Gordon K Smyth
- [BioC] Discrepancy in differential expression gene list after intraspot correlation
Gordon K Smyth
- [BioC] Discrepancy in differential expression gene list after intraspotCorrelation
Kachroo, Priyanka
- [BioC] Downloading metabolic pathway data from KEGG
Tim Clough
- [BioC] duplicated on IRanges object
Manuela Hummel
- [BioC] duplicated on IRanges object
Hervé Pagès
- [BioC] Dye swaps and M values
Mcmahon, Kwyatt
- [BioC] EBImage installs but won't load on Mac OS 10.6.4
W. A. Green
- [BioC] EBImage installs but won't load on Mac OS 10.6.4
Gregoire Pau
- [BioC] EBImage installs but won't load on Mac OS 10.6.4
Michael Dondrup
- [BioC] EBImage installs but won't load on Mac OS 10.6.4
W. A. Green
- [BioC] ecoli2.db
Clémentine Dressaire
- [BioC] ecoli2.db
Marc Carlson
- [BioC] ecoli2.db
Clémentine Dressaire
- [BioC] ecoli2.db
Marc Carlson
- [BioC] ecoli2.db
Clémentine Dressaire
- [BioC] ecoli2.db
Marc Carlson
- [BioC] ecoli2.db
Clémentine Dressaire
- [BioC] ecoli2.db
Marc Carlson
- [BioC] EdgeR - problems running estimateCRDisp
josquin.tibbits at dpi.vic.gov.au
- [BioC] EdgeR - problems running estimateCRDisp
Steve Lianoglou
- [BioC] EdgeR - problems running estimateCRDisp
Gordon K Smyth
- [BioC] EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value
Ying Ye
- [BioC] EdgeR questions in analyzing 454 data-about prior.n, TMM, and p_value
Gordon K Smyth
- [BioC] error fix.by(by.x, x) in Pdinfobuilder package
Michael MOZAR
- [BioC] error fix.by(by.x, x) in Pdinfobuilder package
Benilton Carvalho
- [BioC] error in library(affy)
Mayte Suarez-Farinas
- [BioC] error in library(affy)
Martin Morgan
- [BioC] error in plotKEGGGraph
Robert M. Flight
- [BioC] Error in processing 47 cel files using expresso.
ANJAN PURKAYASTHA
- [BioC] Error in processing 47 cel files using expresso.
Wolfgang Huber
- [BioC] Error loading ArrayExpress in R 2.12 Mac
Michael Dondrup
- [BioC] Error loading ArrayExpress in R 2.12 Mac
Sean Davis
- [BioC] Error loading ArrayExpress in R 2.12 Mac
Michael Dondrup
- [BioC] Error loading ArrayExpress in R 2.12 Mac
Sean Davis
- [BioC] error msg for probe match (altcdfenvs)
Jack Luo
- [BioC] error msg for probe match (altcdfenvs)
Laurent Gautier
- [BioC] Error using arrayQuality and Agilent txt files
F. Javier López
- [BioC] Error using arrayQuality and Agilent txt files
Valerie Obenchain
- [BioC] Error using arrayQuality and Agilent txt files
Valerie Obenchain
- [BioC] Error using arrayQuality and Agilent txt files
F. Javier López
- [BioC] Error using arrayQuality and Agilent txt files
Valerie Obenchain
- [BioC] Error using arrayQuality and Agilent txt files
F. Javier López
- [BioC] Error while ChIPpeakAnno installation
Prashantha Hebbar
- [BioC] Error while ChIPpeakAnno installation
Zhu, Lihua (Julie)
- [BioC] error with MEDIPS.CpGenrich -> resize + segfault in MEDIPS.plotCalibrationPlot
Nora
- [BioC] Error: cannot allocate vector of size 2.8 Gb
Changhe Fu
- [BioC] Error: cannot allocate vector of size 2.8 Gb
Sean Davis
- [BioC] Error: cannot allocate vector of size 2.8 Gb
danieladna
- [BioC] expresso error
ANJAN PURKAYASTHA
- [BioC] expresso error
Vincent Carey
- [BioC] expresso error
ANJAN PURKAYASTHA
- [BioC] expresso error
Vincent Carey
- [BioC] expresso error
ANJAN PURKAYASTHA
- [BioC] expresso error
Vincent Carey
- [BioC] faster way to get differential calls from pileup?
Hollis Wright
- [BioC] faster way to get differential calls from pileup?
Martin Morgan
- [BioC] faster way to get differential calls from pileup?
Sean Davis
- [BioC] faster way to get differential calls from pileup?
Vincent Carey
- [BioC] faster way to get differential calls from pileup?
Vincent Carey
- [BioC] filter on Human Gene U133 Plus 2
Naïma Oumouhou
- [BioC] filter on Human Gene U133 Plus 2
wxu
- [BioC] filter on Human Gene U133 Plus 2
cstrato
- [BioC] FW: strange ChIPpeakAnno and rtracklayer interaction.
Zhu, Lihua (Julie)
- [BioC] Fwd: SAFE with small sample sizes
Ina Hoeschele
- [BioC] Fwd: SAFE with small sample sizes
Ina Hoeschele
- [BioC] Fwd: caught segfault in arrayQualityMetrics
Laurent Gatto
- [BioC] Fwd: *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
Alberto Goldoni
- [BioC] Fwd: *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
Richard Pearson
- [BioC] Fwd: *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
Alberto Goldoni
- [BioC] Fwd: *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
Martin Morgan
- [BioC] Gene Ontology: filtering out most informative terms from a list of GO terms
Aaron Weimann
- [BioC] Gene Ontology: filtering out most informative terms from a list of GO terms
Marc Carlson
- [BioC] gene-locations
Noemi Andor
- [BioC] gene-locations
Vincent Carey
- [BioC] gene-locations
James W. MacDonald
- [BioC] gene-locations
Noe Andor
- [BioC] Geoquery problem - GSE file
S T
- [BioC] Geoquery problem - GSE file
Sean Davis
- [BioC] Geoquery problem - GSE file
S T
- [BioC] GEOquery question
Sean Davis
- [BioC] GEOquery: Best way to get a phenodata table from GSE
Daniel Brewer
- [BioC] GEOquery: Best way to get a phenodata table from GSE
Sean Davis
- [BioC] getNetAffx function when using oligo package
Jon T
- [BioC] getNetAffx function when using oligo package
James W. MacDonald
- [BioC] getNetAffx function when using oligo package
Jon T
- [BioC] getNetAffx function when using oligo package
Benilton Carvalho
- [BioC] Getting annotation into eset
Timothy Wu
- [BioC] Getting annotation into eset
Sean Davis
- [BioC] Getting annotation into eset
Timothy Wu
- [BioC] Getting annotation into eset
Sean Davis
- [BioC] Getting annotation into eset
Marc Carlson
- [BioC] GOStats: can't find probesets, which are in overrepresented GO term
Mike Walter
- [BioC] GOStats: can't find probesets, which are in overrepresented GO term
James W. MacDonald
- [BioC] GOStats: can't find probesets, which are in overrepresented GO term
Mike Walter
- [BioC] GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
Paul Shannon
- [BioC] GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
Paul Shannon
- [BioC] GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
Paul Shannon
- [BioC] GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
Vincent Carey
- [BioC] GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
Martin Morgan
- [BioC] grid.chromosome in quantsmooth, without cytobands?
Paul Shannon
- [BioC] help - where to start
Adrian Johnson
- [BioC] help - where to start
Steve Lianoglou
- [BioC] help - where to start
Martin Morgan
- [BioC] help - where to start
Dan Tenenbaum
- [BioC] help about the GEOquery, Thanks.
Sean Davis
- [BioC] help in downloading some packages.
Veerendra GP
- [BioC] help in downloading some packages.
Michael Dondrup
- [BioC] help in downloading some packages.
Michael Dondrup
- [BioC] help with flank()
joseph
- [BioC] help with flank()
Michael Lawrence
- [BioC] help with flank()
Vincent Carey
- [BioC] help with flank()
joseph
- [BioC] help with flank()
Martin Morgan
- [BioC] How many folds?
Marcelo Brandão
- [BioC] How many folds?
Sean Davis
- [BioC] how to import Agilent CGH custom design xml file into limma
Sean Davis
- [BioC] how to import Agilent CGH custom design xml file into limma
Sean Davis
- [BioC] how to import Agilent CGH custom design xml file into limma
Jarek Bryk
- [BioC] how to map affy SNP ID to pubmed ID
Qian Liu
- [BioC] how to map affy SNP ID to pubmed ID
Marc Carlson
- [BioC] HTqPCR
Heidi Dvinge
- [BioC] HTqPCR : readCtData problem?
Heidi Dvinge
- [BioC] HTqPCR : readCtData problem?
Heidi Dvinge
- [BioC] HTqPCR : readCtData problem?
Stephen Taylor
- [BioC] HTqPCR problem
Heidi Dvinge
- [BioC] Human Affymetrix Exon microarrays
Ernest Turro
- [BioC] Human genomic sequences
Sheena Scroggins
- [BioC] Human genomic sequences
Vincent Carey
- [BioC] Illumina DGE => sRNA detection pipeline
Oleg Moskvin
- [BioC] Illumina DGE => sRNA detection pipeline
Steve Lianoglou
- [BioC] Illumina DGE => sRNA detection pipeline
Sean Davis
- [BioC] Illumina DGE => sRNA detection pipeline
Oleg Moskvin
- [BioC] Illumina QC using ShortRead
Davide Cittaro
- [BioC] Illumina QC using ShortRead
Martin Morgan
- [BioC] Illumina QC using ShortRead
Davide Cittaro
- [BioC] Illumina QC using ShortRead
Martin Morgan
- [BioC] Inconistent behavior with all/any and Rle
Steve Lianoglou
- [BioC] Inconistent behavior with all/any and Rle
Martin Morgan
- [BioC] Inconistent behavior with all/any and Rle
Steve Lianoglou
- [BioC] Installing Bioconductor on Linux...
James Carman
- [BioC] Installing Bioconductor on Linux...
Martin Morgan
- [BioC] Installing Bioconductor on Linux...
James Carman
- [BioC] Installing Bioconductor on Linux...
Steffen Möller
- [BioC] Installing Bioconductor on Linux...
Kasper Daniel Hansen
- [BioC] intermittent oddity in rtracklayer track names
Paul Shannon
- [BioC] intermittent oddity in rtracklayer track names
Michael Lawrence
- [BioC] Interrupting an R command
January Weiner
- [BioC] Interrupting an R command
Kasper Daniel Hansen
- [BioC] issues while using KEGGSOAP
Swati Sinha
- [BioC] issues while using KEGGSOAP
Wolfgang Huber
- [BioC] issues with oligo package
Michael MOZAR
- [BioC] Job Posting: Scientific Programmer
Greg Finak
- [BioC] KEGG pathname to Refseq accession
Viki S
- [BioC] KEGG pathname to Refseq accession
Vincent Carey
- [BioC] Limma :: decideTest question
Lorenzo Bomba
- [BioC] Limma :: decideTest question
Gordon K Smyth
- [BioC] limma for spectral counts
Yolande Tra
- [BioC] limma for spectral counts
Laurent Gatto
- [BioC] limma for spectral counts
Naomi Altman
- [BioC] limma for spectral counts
Pavelka, Norman
- [BioC] limma for spectral counts
Pavelka, Norman
- [BioC] limma makeContrasts
Lorenzo Bomba
- [BioC] limma makeContrasts
Sunny Srivastava
- [BioC] limma makeContrasts
Sunny Srivastava
- [BioC] limma report logFC confidence interval?
Timothy Wu
- [BioC] limma report logFC confidence interval?
Sunny Srivastava
- [BioC] limma report logFC confidence interval?
Gordon K Smyth
- [BioC] Limma time series analysis question
January Weiner
- [BioC] Limma time series analysis question
Gordon K Smyth
- [BioC] LIMMA-interaction term
MassimoAcquaviva at ospedale-gaslini.ge.it
- [BioC] LIMMA-interaction term
James W. MacDonald
- [BioC] LIMMA-interaction term
MassimoAcquaviva at ospedale-gaslini.ge.it
- [BioC] Loading data into AgiMicroRna
Stephen Taylor
- [BioC] Loading data into AgiMicroRna
Neel Aluru
- [BioC] Loading data into AgiMicroRna
Stephen Taylor
- [BioC] Loading data into AgiMicroRna
Neel Aluru
- [BioC] Loading data into AgiMicroRna
Steve Taylor
- [BioC] Loading Niblegen Files to Oligo
Colleen Doherty
- [BioC] Loading Niblegen Files to Oligo
Marcelo Brandão
- [BioC] Loading Niblegen Files to Oligo
Benilton Carvalho
- [BioC] logFC and fold change
Marcelo Brandão
- [BioC] Mac binaries for R 2.12 fixed
Hervé Pagès
- [BioC] makeTranscriptDbFromUCSC: ... Error: Request-URI Too Large
Michael Lawrence
- [BioC] makeTranscriptDbFromUCSC: ... Error: Request-URI Too Large
joseph
- [BioC] makeTranscriptDbFromUCSC: ... Error: Request-URI Too Large
Michael Lawrence
- [BioC] makeTranscriptDbFromUCSC: ... Error: Request-URI Too Large
joseph
- [BioC] Mapping domains to exons
anupam sinha
- [BioC] Mapping domains to exons
Mark Cowley
- [BioC] Mapping domains to exons
Marc Carlson
- [BioC] matrix transformation
Bucher Elmar
- [BioC] matrix transformation
Sean Davis
- [BioC] matrix transformation
Vincent Carey
- [BioC] matrix transformation
Bucher Elmar
- [BioC] matrix transformation
Ido M. Tamir
- [BioC] matrix transformation
Bucher Elmar
- [BioC] memory limit
Noemi Andor
- [BioC] memory limit
Steve Lianoglou
- [BioC] memory limit
Noe Andor
- [BioC] method and package for imputing spectral counts from masspectrometry
Yolande Tra
- [BioC] method and package for imputing spectral counts from masspectrometry
Moshe Olshansky
- [BioC] method and package for imputing spectral counts from masspectrometry
Yolande Tra
- [BioC] Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Chris Fields
- [BioC] Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
yemi yomi
- [BioC] Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Triantafillos Paparountas
- [BioC] Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Triantafillos Paparountas
- [BioC] multicore Vignette or HowTo??
Edwin Groot
- [BioC] multicore Vignette or HowTo??
Tim Triche
- [BioC] multicore Vignette or HowTo??
Tim Triche
- [BioC] multicore Vignette or HowTo??
Martin Morgan
- [BioC] multicore Vignette or HowTo??
Edwin Groot
- [BioC] multicore Vignette or HowTo??
Edwin Groot
- [BioC] multicore Vignette or HowTo??
Joern Toedling
- [BioC] Need help in Anova design (contrast.tratment)
ashwin Vishnuvardhana
- [BioC] Need help in Anova design (contrast.tratment)
Gordon K Smyth
- [BioC] need help in Contrast. Treatment design
Vishnuvardhana, Ashwin [BSD] - SRF
- [BioC] need help on
Jin, Jp
- [BioC] need help on
Jin, Jp
- [BioC] New gage package: Generally Applicable Gene-set/Pathway Analysis
Luo Weijun
- [BioC] New gage package: Generally Applicable Gene-set/Pathway Analysis
Edwin Groot
- [BioC] New gage package: Generally Applicable Gene-set/Pathway Analysis
Luo Weijun
- [BioC] Normalization by DEseq
Rui Luo
- [BioC] Normalization by DEseq
Wolfgang Huber
- [BioC] Normalization by DEseq
Simon Anders
- [BioC] Normalization using dCHIP
Lakshmi Kastury
- [BioC] omitted rows using getBM
Mcmahon, Kwyatt
- [BioC] omitted rows using getBM
Steffen Durinck
- [BioC] omitted rows using getBM
Mcmahon, Kwyatt
- [BioC] Outlier detection in DEseq
Rui Luo
- [BioC] Outlier detection in DEseq
Mark Robinson
- [BioC] Outlier detection in DEseq
Simon Anders
- [BioC] Outlier detection in DEseq
Wolfgang Huber
- [BioC] Package gpls_1.22.0.tar.gz has been built for Windows
Uwe.Ligges at R-Project.org
- [BioC] package help
Adrian Johnson
- [BioC] package help
Wolfgang Huber
- [BioC] Package Icens_1.22.0.tar.gz has been built for Windows
Uwe.Ligges at R-Project.org
- [BioC] Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Pavelka, Norman
- [BioC] Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Yolande Tra
- [BioC] Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Pavelka, Norman
- [BioC] Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Ina Hoeschele
- [BioC] Package xps: problem with RMA normalization for Human Gene ST 1.0
Naïma Oumouhou
- [BioC] Package xps: problem with RMA normalization for Human Gene ST 1.0
cstrato
- [BioC] Package xps: problem with RMA normalization for Human Gene ST 1.0
Naïma Oumouhou
- [BioC] Pairwise Function Output
Lakshmi Kastury
- [BioC] Parsing Illumina Golden Gate idat files
Mike Walter
- [BioC] Parsing Illumina Golden Gate idat files
Matthew Ritchie
- [BioC] Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
Gerhard Thallinger
- [BioC] Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
John Antony Gaspar
- [BioC] Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
John Antony Gaspar
- [BioC] Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
Steve Shen
- [BioC] Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Aedin Culhane
- [BioC] Problem importing ArrayExpress data for custom array into BioConductor
Aatish
- [BioC] Problem importing ArrayExpress data for custom array into BioConductor
Valerie Obenchain
- [BioC] Problem importing ArrayExpress data for custom array into BioConductor
Wolfgang Huber
- [BioC] Problem installing Rsamtools and ShortRead under Fedora 10.
Vincent Carey
- [BioC] Problem installing Rsamtools and ShortRead under Fedora 10.
Bernt Guldbrandtsen
- [BioC] Problem installing Rsamtools and ShortRead under Fedora 10.
Martin Morgan
- [BioC] Problem installing Rsamtools and ShortRead under Fedora 10.
Bernt Guldbrandtsen
- [BioC] Problem of read Illumina bead array data in R 2.12.0
jrwang at itri.org.tw
- [BioC] Problem of read Illumina bead array data in R 2.12.0
Mark Dunning
- [BioC] Problems with oligo package : Nimblegen microarray analysis
Benilton Carvalho
- [BioC] Problems with oligo package : Nimblegen microarray analysis
Michael MOZAR
- [BioC] Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
Paolo Sonego
- [BioC] Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
Sean Davis
- [BioC] Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
Paolo Sonego
- [BioC] Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
Sean Davis
- [BioC] Puma question
Manca Marco (PATH)
- [BioC] Puma question
Manca Marco (PATH)
- [BioC] Puma question
Richard Pearson
- [BioC] Question about subtracks shown using ‘rtracklayer’ package
LiGang
- [BioC] Question about subtracks shown using ‘rtracklayer’ package
Michael Lawrence
- [BioC] Questions about model matrix, logFC and adjusted P.value of t-test
Mingkwan.Nipitwattanaphon at unil.ch
- [BioC] Questions about model matrix, logFC and adjusted P.value of t-test
Maciej Jończyk
- [BioC] Questions about model matrix, logFC and adjusted P.value of t-test
Gordon K Smyth
- [BioC] R command readIllumina with beadarray
Hajar Hassani Lahsinoui
- [BioC] R command readIllumina with beadarray
Tim Triche
- [BioC] R command readIllumina with beadarray
Matthew Ritchie
- [BioC] R command readIllumina with beadarray
Hajar Hassani Lahsinoui
- [BioC] R hanging up on install of BioConductor
ANJAN PURKAYASTHA
- [BioC] R hanging up on install of BioConductor
Vincent Carey
- [BioC] R hanging up on install of BioConductor
Hollis Wright
- [BioC] R hanging up on install of BioConductor
Steve Lianoglou
- [BioC] R hanging up on install of BioConductor
Steve Lianoglou
- [BioC] R hanging up on install of BioConductor
ANJAN PURKAYASTHA
- [BioC] R hanging up on install of BioConductor
Dan Tenenbaum
- [BioC] R: Doubt about the use of xmapcore Vs exonmap
Manca Marco (PATH)
- [BioC] R: need help on
Manca Marco (PATH)
- [BioC] R: Puma question
Manca Marco (PATH)
- [BioC] R: Puma question
Manca Marco (PATH)
- [BioC] R: Puma question
Richard Pearson
- [BioC] R: R: Puma question
Manca Marco (PATH)
- [BioC] RdbiPgSQL installation trouble
Tena Sakai
- [BioC] RdbiPgSQL installation trouble
Martin Morgan
- [BioC] RdbiPgSQL installation trouble
Tena Sakai
- [BioC] ReadAffy() can't read CEL files from TCGA...
Paul Geeleher
- [BioC] ReadAffy() can't read CEL files from TCGA...
Vincent Carey
- [BioC] ReadAffy() can't read CEL files from TCGA...
Tim Triche
- [BioC] ReadAffy() can't read CEL files from TCGA...
Paul Geeleher
- [BioC] ReadAffy() can't read CEL files from TCGA...
Martin Morgan
- [BioC] ReadAffy() can't read CEL files from TCGA...
Paul Geeleher
- [BioC] remove microarray batch effects using Limma
Xie, Zhi (NIH/NHLBI) [E]
- [BioC] remove microarray batch effects using Limma
Moshe Olshansky
- [BioC] remove microarray batch effects using Limma
Mike Walter
- [BioC] remove microarray batch effects using Limma
Xie, Zhi (NIH/NHLBI) [E]
- [BioC] replicable of *PLGEM*
Pavelka, Norman
- [BioC] retrieve genes names after KEGG hypergeometric test
Clémentine Dressaire
- [BioC] retrieve genes names after KEGG hypergeometric test
Mike Walter
- [BioC] retrieve genes names after KEGG hypergeometric test
Clémentine Dressaire
- [BioC] Rgraphviz with rApache problems
Robert M. Flight
- [BioC] Rgraphviz with rApache problems
Robert M. Flight
- [BioC] Rif: Limma: nestedF and interaction term
MassimoAcquaviva at ospedale-gaslini.ge.it
- [BioC] Ringo for Nimblegen ChIP-chip data in GEO
Yong Li
- [BioC] Ringo for Nimblegen ChIP-chip data in GEO
Wolfgang Huber
- [BioC] RMA XPS Problem on MoGene 1.0 ST
Zack Liu
- [BioC] RMA XPS Problem on MoGene 1.0 ST
cstrato
- [BioC] RMA XPS Problem on MoGene 1.0 ST
cstrato
- [BioC] RMA XPS Problem on MoGene 1.0 ST - Solved
cstrato
- [BioC] ROC query
rasanpreet kaur suri
- [BioC] ROC query
rasanpreet kaur suri
- [BioC] ROC query
Sean Davis
- [BioC] Rsamtools from biocLite using R-devel
Kasper Daniel Hansen
- [BioC] Rsamtools from biocLite using R-devel
Martin Morgan
- [BioC] Rsamtools from biocLite using R-devel
Kasper Daniel Hansen
- [BioC] Rsamtools from biocLite using R-devel
Tengfei Yin
- [BioC] Rsamtools from biocLite using R-devel
Kasper Daniel Hansen
- [BioC] Rsamtools from biocLite using R-devel
Dan Tenenbaum
- [BioC] Rsamtools from biocLite using R-devel
Kasper Daniel Hansen
- [BioC] Rsamtools from biocLite using R-devel
dtenenba at fhcrc.org
- [BioC] Rsamtools hangs reading SOLiD bam files
Asta Laiho
- [BioC] Rsamtools hangs reading SOLiD bam files
Martin Morgan
- [BioC] Rsamtools Memory Issue
Hollis Wright
- [BioC] Rsamtools Memory Issue
Martin Morgan
- [BioC] Rsamtools Memory Issue
Hollis Wright
- [BioC] rtracklayer 'track' method, a viewLimits parameter?
Paul Shannon
- [BioC] rtracklayer 'track' method, a viewLimits parameter?
Vincent Carey
- [BioC] rtracklayer 'track' method, a viewLimits parameter?
Michael Lawrence
- [BioC] rtracklayer 'track' method, a viewLimits parameter?
Paul Shannon
- [BioC] rtracklayer 'track' method, a viewLimits parameter?
Michael Lawrence
- [BioC] rtracklayer -- how to hide some default tracks? fine-grained control of track view mode (pack, full, dense, squish...)
Paul Shannon
- [BioC] rtracklayer -- how to hide some default tracks? fine-grained control of track view mode (pack, full, dense, squish...)
Paul Shannon
- [BioC] rtracklayer -- how to hide some default tracks? fine-grained control of track view mode (pack, full, dense, squish...)
Michael Lawrence
- [BioC] rtracklayer -- how to hide some default tracks? fine-grained control of track view mode (pack, full, dense, squish...)
Michael Lawrence
- [BioC] rtracklayer: import.gff seems to be very slow
Michael Dondrup
- [BioC] rtracklayer: import.gff seems to be very slow
Michael Lawrence
- [BioC] rtracklayer: import.gff seems to be very slow
Michael Dondrup
- [BioC] rtracklayer: No export function for 'bedLines' found [was Re: intermittent oddity in rtracklayer track names]
Paul Shannon
- [BioC] rtracklayer: No export function for 'bedLines' found [was Re: intermittent oddity in rtracklayer track names]
Paul Shannon
- [BioC] rtracklayer: No export function for 'bedLines' found [was Re: intermittent oddity in rtracklayer track names]
Michael Lawrence
- [BioC] rtracklayer: No export function for 'bedLines' found [was Re: intermittent oddity in rtracklayer track names]
Michael Lawrence
- [BioC] scaling on normlized data set
Hossain Nawaz
- [BioC] scaling on normlized data set
Sean Davis
- [BioC] scripted svg - was: Error using arrayQuality and Agilent txt files
Wolfgang Huber
- [BioC] selecting column with beadarray
Hajar Hassani Lahsinoui
- [BioC] Setting up the contrast matrix
Supriya Munshaw
- [BioC] Several faculty positions in Statistics and Bioinformatics at Penn State
Naomi Altman
- [BioC] ShortRead for sequencing data quality assessment
heyi xiao
- [BioC] ShortRead for sequencing data quality assessment
Valerie Obenchain
- [BioC] ShortRead qa() for BAM files?
Hollis Wright
- [BioC] ShortRead qa() for BAM files?
Martin Morgan
- [BioC] Simpleaffy problems
James W. MacDonald
- [BioC] spillover method in flowCore package
stacy xu
- [BioC] Statistical Bioinformatics Position in Oxford
Stephen Taylor
- [BioC] strange ChIPpeakAnno and rtracklayer interaction.
oleg at stat.berkeley.edu
- [BioC] strange ChIPpeakAnno and rtracklayer interaction.
Michael Lawrence
- [BioC] strange ChIPpeakAnno and rtracklayer interaction.
Vincent Carey
- [BioC] svn version of rtracklayer error
Michael Dondrup
- [BioC] svn version of rtracklayer error
Martin Morgan
- [BioC] svn version of rtracklayer error
Michael Dondrup
- [BioC] svn version of rtracklayer error
Steve Lianoglou
- [BioC] Tenure-track position in Applied Statistics, Purdue University
Olga Vitek
- [BioC] the issue with analysis of multi-channel screen
Ning
- [BioC] the issue with analysis of multi-channel screen
Wolfgang Huber
- [BioC] Three-color microarray analysis
Thomas Sandmann
- [BioC] Three-color microarray analysis
Wolfgang Huber
- [BioC] Three-color microarray analysis
Thomas Sandmann
- [BioC] Three-color microarray analysis
Wolfgang Huber
- [BioC] Two Bioinformatics Openings @ the Institute of Cancer
Claude Chelala
- [BioC] Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Christian Ruckert
- [BioC] Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Benjamin Otto
- [BioC] Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
James W. MacDonald
- [BioC] Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Marc Carlson
- [BioC] Using rtracklayer for ranges of Genomic DNA
Sheena Scroggins
- [BioC] Using rtracklayer for ranges of Genomic DNA
Michael Lawrence
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Martin Morgan
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Steve Lianoglou
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Martin Morgan
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Steve Lianoglou
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Vincent Carey
- [BioC] Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Steve Lianoglou
- [BioC] x-Tile in R
Samuel Okoye
Last message date:
Sat Oct 30 14:56:50 CEST 2010
Archived on: Mon Nov 1 17:47:47 CET 2010
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