[BioC] EBImage installs but won't load on Mac OS 10.6.4

Fri Oct 15 15:34:40 CEST 2010

Hi Walton,

you are using MacPorts, right? Possibly you unintentionally installed another R as a dependency through MacPorts. I had the same effect. That MacPorts R will be 
$ which R
/opt/local/bin/R
and will become your default R on the console  (if you just type 'R') then, but the packages you install through the GUI don't go there, the  package installs are distinct. The cran Mac R is
normally in  /usr/bin/R
try to find our where the package is installed.

Hope that helps
 Michael

Am Oct 15, 2010 um 3:10 PM schrieb Gregoire Pau:

> Hello Walton,
> 
> EBImage works fine on Mac systems. It seems that you're facing a problem caused by the concurrent installation of different versions of R and/or of different architecture (32-bit and 64-bit), unrelated to EBImage.
> 
> From your R CMD INSTALL output, it appears that you installed the 64-bit version of EBImage, see:
> "installing to /Library/Frameworks/R.framework/Resources/library/EBImage/libs/x86_64"
> 
> What is your version of R, when started from the command line ? Did you try to start R and load EBImage from the command line ? Did it work ? Did you try to start R64.app and load EBImage ?
> 
> The warning message 'Xlib: extension "RANDR" missing on display ":0.0"' is caused by the MacPort version of GTK+. I don't know why it pops up but it seems harmless.
> 
> Hope this helps,
> 
> Greg
> ---
> Gregoire Pau
> EMBL Research officer
> http://www.embl.de/~gpau/
> 
> On 14/10/2010 07:50, W. A. Green wrote:
>> 
>> Probably this is a question for Gregoire Pau, but I know there have been
>> others who had trouble installing EBImage on Snow Leopard....Haven't
>> found a fix for my problem on BioC or R-sig-mac lists, though.
>> 
>> On:
>> 
>> platform x86_64-apple-darwin9.8.0
>> arch x86_64
>> os darwin9.8.0
>> system x86_64, darwin9.8.0
>> status
>> major 2
>> minor 11.1
>> year 2010
>> month 05
>> day 31
>> svn rev 52157
>> language R
>> version.string R version 2.11.1 (2010-05-31)
>> 
>> The source installation seems to run fine (see output below), but
>> 
>>> library(EBImage)
>> 
>> gives:
>> 
>> Error in library(EBImage) : there is no package called 'EBImage'
>> 
>> The only error in the install process seems to be:
>> 
>> Xlib: extension "RANDR" missing on display ":0.0".
>> 
>> which doesn't seems to prevent gtk-demo from opening an X window and
>> running fine.
>> 
>> bash-3.2$ gtk-demo
>> Xlib: extension "RANDR" missing on display ":0.0".
>> bash-3.2$ convert -version
>> Version: ImageMagick 6.5.8-4 2009-12-15 Q16 http://www.imagemagick.org
>> Copyright: Copyright (C) 1999-2009 ImageMagick Studio LLC
>> Features:
>> 
>> bash-3.2$ pkg-config gtk+-2.0 --libs
>> -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0
>> -lpangocairo-1.0 -lXinerama -lXi -lXrandr -lXcursor -lXcomposite
>> -lXdamage -lpangoft2-1.0 -lgio-2.0 -lXext -lXfixes -lcairo -lpixman-1
>> -lpng12 -lXrender -lX11 -lXau -lXdmcp -lpango-1.0 -lm -lfontconfig
>> -lexpat -lfreetype -lz -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0
>> -lglib-2.0 -lintl -liconv
>> bash-3.2$ Magick-config --libs
>> -L/opt/local/lib -lMagickCore -llcms -ltiff -lfreetype -ljpeg
>> -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz -liconv -lXext -lSM
>> -lICE -lX11 -lXt -lbz2 -lz -lm -lgomp -lclparser -Wl,-framework,OpenCL
>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>> -lpthread -lltdl
>> 
>> I've also tried local source installs from the mac gui in both R and R64
>> and install.packages() from within R....Nothing seems to work.
>> 
>> Any guidance would be much appreciated,
>> 
>> Walton
>> 
>> Here's the install output:
>> 
>> bash-3.2$ sudo R CMD INSTALL EBImage_3.5.5.tar.gz
>> * installing to library
>> â€˜/Library/Frameworks/R.framework/Resources/libraryâ€™
>> * installing *source* package â€˜EBImageâ€™ ...
>> checking for Magick-config... yes
>> * found ImageMagick version 6.6.3 Q16
>> * found ImageMagick includes in -I/opt/local/include/ImageMagick
>> checking for pkg-config... yes
>> * compiling with GTK+ support
>> -----------------------------------------------------
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> ** libs
>> *** arch - x86_64
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c EBImage.c -o EBImage.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c conversions.c -o conversions.o
>> conversions.c: In function â€˜magick2SEXPâ€™:
>> conversions.c:148: warning: â€˜DispatchImageâ€™ is deprecated (declared
>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>> conversions.c:153: warning: â€˜DispatchImageâ€™ is deprecated (declared
>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>> conversions.c:155: warning: â€˜DispatchImageâ€™ is deprecated (declared
>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>> conversions.c:157: warning: â€˜DispatchImageâ€™ is deprecated (declared
>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>> conversions.c:162: warning: â€˜DispatchImageâ€™ is deprecated (declared
>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c display.c -o display.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c distmap.c -o distmap.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c drawable.c -o drawable.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c features_haralick.c -o features_haralick.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c features_hull.c -o features_hull.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c features_moments.c -o features_moments.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c features_zernike.c -o features_zernike.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c filters_magick.c -o filters_magick.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c floodFill.cpp -o
>> floodFill.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c io.c -o io.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c morphology.c -o morphology.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c normalize.c -o normalize.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c objects.c -o objects.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c ocontour.c -o ocontour.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c propagate.cpp -o
>> propagate.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c thresh.c -o thresh.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c tile.c -o tile.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c tools.c -o tools.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>> -I/opt/local/include -I/opt/local/include/glib-2.0
>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>> -fPIC -g -O2 -c translate.c -o translate.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c watershed.cpp -o
>> watershed.o
>> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
>> dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib
>> -o EBImage.so EBImage.o conversions.o display.o distmap.o drawable.o
>> features_haralick.o features_hull.o features_moments.o features_zernike.o
>> filters_magick.o floodFill.o io.o morphology.o normalize.o objects.o
>> ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o
>> -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0
>> -lpangocairo-1.0 -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage
>> -lpangoft2-1.0 -lgio-2.0 -lXext -lXfixes -lcairo -lpixman-1 -lpng12
>> -lXrender -lX11 -lXau -lXdmcp -lpango-1.0 -lm -lfontconfig -lexpat
>> -lfreetype -lz -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl
>> -liconv -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib
>> -L/opt/local/lib -lMagickCore -llcms -ltiff -lfreetype -ljpeg
>> -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz -liconv -lXext -lSM
>> -lICE -lX11 -lXt -lbz2 -lz -lm -lclparser -Wl,-framework,OpenCL
>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>> -lpthread -lltdl -L/opt/local/lib -lMagickWand -lMagickCore -llcms -ltiff
>> -lfreetype -ljpeg -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz
>> -liconv -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lclparser
>> -Wl,-framework,OpenCL
>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>> -lpthread -lltdl -F/Library/Frameworks/R.framework/.. -framework R
>> -Wl,-framework -Wl,CoreFoundation
>> installing to
>> /Library/Frameworks/R.framework/Resources/library/EBImage/libs/x86_64
>> ** R
>> ** inst
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>> ** building package indices ...
>> ** testing if installed package can be loaded
>> Xlib: extension "RANDR" missing on display ":0.0".
>> 
>> * DONE (EBImage)
>> 
>> ## .signature
>> # Walton A. Green
>> # E-mail: $ echo wagreenXbricol.net | tr 'X' '@'
>> # URL: <http://www.bricol.net>
>> # Phone: (203) 640-8122
>> #################### 60 characters wide ####################
>> 
>> _______________________________________________
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>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
> 
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