[BioC] Fwd: caught segfault in arrayQualityMetrics

[Laurent Gatto]

Dear all,

I am happy to report that the issue with arrayQualityMetrics is fixed
with today's R-devel.

Best wishes,

Laurent

> sessionInfo()
R version 2.13.0 Under development (unstable) (2010-10-09 r53266)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.utf8       LC_NUMERIC=C
 [3] LC_TIME=en_GB.utf8        LC_COLLATE=en_GB.utf8
 [5] LC_MONETARY=C             LC_MESSAGES=en_GB.utf8
 [7] LC_PAPER=en_GB.utf8       LC_NAME=C
 [9] LC_ADDRESS=C              LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] arrayQualityMetrics_3.0.15 vsn_3.17.2
[3] affyPLM_1.25.1             preprocessCore_1.11.0
[5] gcrma_2.21.1               affy_1.27.3
[7] Biobase_2.9.2

loaded via a namespace (and not attached):
 [1] affyio_1.17.4        annotate_1.27.2      AnnotationDbi_1.11.9
 [4] beadarray_1.99.2     Biostrings_2.17.48   DBI_0.2-5
 [7] genefilter_1.31.2    grid_2.13.0          hwriter_1.2
[10] IRanges_1.7.39       lattice_0.19-13      latticeExtra_0.6-15
[13] limma_3.5.21         marray_1.27.0        RColorBrewer_1.0-2
[16] RSQLite_0.9-2        simpleaffy_2.25.0    splines_2.13.0
[19] stats4_2.13.0        survival_2.36-1      SVGAnnotation_0.6-0
[22] XML_3.2-0            xtable_1.5-6



On 10 October 2010 02:16, Martin Morgan <mtmorgan at fhcrc.org> wrote:
> Hi Laurent, Wolfgang --
>
> I communicated with Paul about this and he introduced a fix at r53184; I
> thought it didn't address the issue but in the end it seems to have for
> me (my 'reproducible example' was from ?rasterImage, as
>
> x11(type="Xlib")
> plot(c(100, 250), c(300, 450), type = "n", xlab="", ylab="")
> image <- as.raster(matrix(0:1, ncol=5, nrow=4))
> rasterImage(image, 100, 300, 150, 350, interpolate=FALSE)
>
>
> Does the arrayQualityMetrics example work for you?
>
> Martin
>