[BioC] Gene Ontology: filtering out most informative terms from a list of GO terms
Aaron Weimann
aweimann at cipf.es
Wed Oct 13 16:32:55 CEST 2010
Hello everyone,
I wish to filter a list of Gene Ontology terms for the tip terms (most
informative GO level) i.e. removing all GO terms which have more general
ancestors in the GO hierarchy, also contained in this list. In the graph
view this would mean, that after having applied the filter, there
should be no GO terms in the graph which have more informative children
and successors.
I had a look at the different packages dealing with the GO in
bioconductor but haven´t found a suitable one so far. Is there by chance
anybody, who knows a package in bioconductor, which can be used to
tackle this problem?
Thanks a lot for your time,
Aaron
-
Aaron Weimann BSc
Bioinformatics and Genomics Department
Centro de Investigación Príncipe Felipe
Avda. Autopista del Saler, 16-3 (junto Oceanográfico)
46012 VALENCIA (Spain)
Tel: +34 96 328 96 80 Ext. 1011
Fax: +34 96 328 97 01
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