[BioC] Fwd: *** caught segfault *** ....cause 'invalid permissions' with PUMA pachage

[Alberto Goldoni]

sorry i forget

my sessionInfo

> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C
 [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8
 [5] LC_MONETARY=C             LC_MESSAGES=en_US.utf8
 [7] LC_PAPER=en_US.utf8       LC_NAME=C
 [9] LC_ADDRESS=C              LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

---------- Forwarded message ----------
From: Alberto Goldoni <alberto.goldoni1975 at gmail.com>
Date: 2010/10/21
Subject: *** caught segfault *** ....cause 'invalid permissions' with
PUMA pachage
To: BioC <bioconductor at stat.math.ethz.ch>


Dear all,
today i have installed "puma" package in my second computer with
ubuntu 64 bit and when i try to run this command:

eset_estrogen_mmgmos <- mmgmos(affybatch.estrogen, gsnorm="none")

it return this error:

Model optimising
 *** caught segfault ***
address 0x7f307c7102ec, cause 'invalid permissions'

Traceback:
 1: .Call("mmgmos_c", pm(object), mm(object), genes,
probeNames(object),     phis, prctiles, length(prctiles), savepar,
eps, PACKAGE = "puma")
 2: mmgmos(data, gsnorm = "none")

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace

IT'S VERY STRANGE!!!!! because yesterday with the other computer with
ubuntu 32 bit puma was able to perform this type of calculation...

it seems an error due to the R 64 bit version....

someone can help me because in internet i was not able to find a trick!

best regards

--
-----------------------------------------------------
Dr. Alberto Goldoni
Parma, Italy
-----------------------------------------------------



-- 
-----------------------------------------------------
Dr. Alberto Goldoni
Parma, Italy