[BioC] error in library(affy)

[Martin Morgan]

On 10/21/2010 12:14 PM, Mayte Suarez-Farinas wrote:
> Hi,
> I just installed R.2.12
> and started installing BioC packages using bioCLite.
> everything worked ok but of all libraries I installed the 'affy' is not
> working.
> The library is installed though.
> 
> library(affy)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/affyio/libs/x86_64/affyio.so':
> 
>  
> dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/affyio/libs/x86_64/affyio.so,
> 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib

Hi Mayte -- the '2.11' indicates that the affyio library is trying to
use the wrong version of R. Try re-installing affyio with
biocLite('affyio').

Martin

>   Referenced from:
> /Library/Frameworks/R.framework/Versions/2.12/Resources/library/affyio/libs/x86_64/affyio.so
> 
>   Reason: image not found
> Error: package/namespace load failed for 'affy'
> 
> 
> sessionInfo()
> R version 2.12.0 (2010-10-15)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] lattice_0.19-13 limma_3.6.0     edgeR_1.8.0     Biobase_2.10.0
> 
> loaded via a namespace (and not attached):
> [1] grid_2.12.0  tools_2.12.0
> 
> 
> 
> Mayte Suarez-Farinas
> Research Associate, The Rockefeller University
> Biostatistician, The Rockefeller University Hospital
> 1230 York Ave, Box 178,
> New York, NY, 10065
> +1(212) 327-8213
> 
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