[BioC] help - where to start

[Martin Morgan]

On 10/05/2010 03:07 PM, Adrian Johnson wrote:
> Hello group,
> I just have my fastq files from a sequencing group. what kind of
> diagnostics one can do using bioconductor? I have a slight idea about
> ngs but do not know where to start?
> What kind of quality assessment tools can be applied on fastq files to
> find if the quality of the reads are good.
> Sorry for a very naive question, just taking baby steps.

There's a brief overview at

  http://bioconductor.org/help/workflows/high-throughput-sequencing/

Also the updated biocViews widget at

  http://bioconductor.org/help/bioc-views/release/BiocViews.html

e.g., Software / AssayTechnologies / HighThroughputSequencing

Martin

> 
> thanks
> Ad
> 
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