[BioC] ChIPpeakAnno

[Zhu, Lihua (Julie)]

Kathleen,

Please refer to the discussion at
http://permalink.gmane.org/gmane.science.biology.informatics.conductor/30115
. Thanks!

Best regards,

Julie


On 10/26/10 11:52 AM, "Kathleen O'Hagan" <kathleen.ohagan at qub.ac.uk> wrote:

> Dear Dr. Zhu
> 
> I am currently using the ChIPpeakAnno bioconductor package to annotated
> Chip-seq data. I have 1 sample that have been immunoprecipitated with 2
> different antibodys for 2 different histone modifications. I am interested in
> indentifing genes that have both histone marks. I am interesred in your
> "makeVennDiagram" code. My question is- how is the "totalTest" parameter
> defined? Is it the total number of peaks in the file with the most peaks?
> 
> Kind regards
> 
> Kathleen O'Hagan