August 2007 Archives by thread
Starting: Wed Aug 1 01:39:37 CEST 2007
Ending: Fri Aug 31 17:48:31 CEST 2007
Messages: 441
- [BioC] passing "main" argument to function plotPCA of affycoretools
Mark W Kimpel
- [BioC] nimblegen aCGH
yoo hoo
- [BioC] Using Ringo
Joern Toedling
- [BioC] heatmap.2
Benjamin Otto
- [BioC] heatmap.2
Jenny Drnevich
- [BioC] heatmap.2
Jenny Drnevich
- [BioC] How's ur day?
Betty
- [BioC] problems in limma
Gordon K Smyth
- [BioC] One-Color Agilent miRNA microarrays
Gordon K Smyth
- [BioC] read.phenoData vs read.AnnotatedDataFrame
Johnstone, Alice
- [BioC] Needed help on maanova fitmaanova function
Marcelo Laia
- [BioC] heatmap.2
Matthias.Kohl at stamats.de
- [BioC] QVALUE in LIMMA
Alessandro Fazio
- [BioC] about gcrma
chen zhong
- [BioC] Trying to convert to ExpressionSet object problems
Daniel Brewer
- [BioC] Lerne heisse Singles aus Deiner Umgebung kennen ( gelten Das)
flux5220
- [BioC] Distance function and gene expression standardization for clustering
Serge Eifes
- [BioC] FDR of enrichment analysis and other questions on GOstats
Serge Eifes
- [BioC] Questions regarding LUMI
L.N. Laredj
- [BioC] How to sort a matrix based on its column names and preserving the identical column names
carol white
- [BioC] Comparing limma results of two different groupings
Daniel Brewer
- [BioC] Help on basic skills on R and maanova
Marcelo Laia
- [BioC] Problems with lumiR/lumiMouseV1
Cei Abreu-Goodger
- [BioC] simpleaffy QCstats and affyQAReport
msettles at vandals.uidaho.edu
- [BioC] I: Two way anova or manova?
Naomi Altman
- [BioC] simpleaffy QCstats and affyQAReport repost
Matt Settles
- [BioC] The criteria to be used in a meta-study by using SAM
Alex Tsoi
- [BioC] outlier detection of fit.li.wong
Yi Xing
- [BioC] Determining an overlapping annotation data subset (overlap/overlaps)
Stephen Montgomery
- [BioC] Limma: Ignoring sample in differential analysis
Daniel Brewer
- [BioC] exonmap install problem
Sophie Gallina
- [BioC] over-representation of specific transcription factors in gene lists
Mark W Kimpel
- [BioC] oligo package locked database question
Tae-Hoon Chung
- [BioC] An error of affylmGUI
Daofeng Li
- [BioC] Problems with expresso
Markus Schmidberger
- [BioC] Saving Median values to an Affy CEL file
Nathan Haigh
- [BioC] Saving Median values to an Affy CEL file
Nathan Haigh
- [BioC] Using a custom CDF file
Nathan Haigh
- [BioC] question in siggenes : how to have all list of gnes and thre p value
el mousselly antra
- [BioC] [Fwd: exonmap install problem] Resolution note
Sophie Gallina
- [BioC] How to get probeset ID
alex lam (RI)
- [BioC] limma - Considering Batch Effect
Nathan Haigh
- [BioC] Access to bioconductor.org
pingou
- [BioC] 2x2 factorial in Limma
Mark W Kimpel
- [BioC] Background Correct Error
Jason Pear
- [BioC] Beadarray expression data
Ina Hoeschele
- [BioC] Time series analysis using predefined sets of genes
Hooiveld, Guido
- [BioC] ControlID Qcinfo slot in Illumina beadarray summary data?
Johnstone, Alice
- [BioC] illumina data
Yogi Sundaravadanam
- [BioC] Time series analysis using predefined sets of genes
Ana Conesa
- [BioC] Problems with affycomp - quantile.default
Markus Schmidberger
- [BioC] create an new AnnotatedDataFrame
GHAVI-HELM Yad
- [BioC] beadarray - combing
Krys Kelly
- [BioC] "all" category in annotation data
Michael Newton
- [BioC] how to get fewer cut points with DNAcopy or GLAD
Wittner, Ben, Ph.D.
- [BioC] Exploding PLASQ Inevitable : slot exprs AffyBatch
pingzhao Hu
- [BioC] GDS2eSet problems
Mcmahon, Wyatt
- [BioC] affyxparser package question
Tae-Hoon Chung
- [BioC] help for
ghxiao at hrbmu.edu.cn
- [BioC] SAM timecourse or what else ?
Davide Valentini
- [BioC] SAM timecourse or what else ?
Ana Conesa
- [BioC] Loop design -> inferring
Yannick Wurm
- [BioC] usage of "all" category in annotation data
Michael Newton
- [BioC] Pulling significant gene ids from beadarray data
Johnstone, Alice
- [BioC] Du willst Heute noch realen Sex haben? ( Augen langen)
those1559 at indiatimes.com
- [BioC] heatmap.2
Kauer Maximilian Otto
- [BioC] html report of hyperGTest question
Siarhei Manakou
- [BioC] DNAcopy plot just one sample
Daniel Brewer
- [BioC] Understanding Bioinformatics
Brodie, Lucy
- [BioC] Help: Need to Identify all FCS files in a folder (flowCore)
M. Jankowski
- [BioC] Extract raw numerical data from a flowframe?
M. Jankowski
- [BioC] basicplot functionality (flowCore/rflowcyt)
M. Jankowski
- [BioC] flowCore: Prerequisites for norm2Filter?
M. Jankowski
- [BioC] flowCore: Prerequisites for norm2Filter?
M. Jankowski
- [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")
mete at seas.upenn.edu
- [BioC] Loop design -> inferring
Gordon Smyth
- [BioC] Special Characters? (flowViz | R question)
M. Jankowski
- [BioC] KEGG package
Yihuan Xu
- [BioC] Cross validation
Li Xiao
- [BioC] KEGG package
John Zhang
- [BioC] Illumina bead arrays
Ina Hoeschele
- [BioC] Problem with some exonmap X.to.Y functions
Sophie Gallina
- [BioC] pd.mapping 10Karray
Marianne Tuefferd
- [BioC] question regarding the effect of mean centering and scaling on classification
James Anderson
- [BioC] Question on filtering in the Category package
Boel Brynedal
- [BioC] Illumina bead arrays
Pan Du
- [BioC] Reading Agilent files using read.maimages
Steve Taylor
- [BioC] question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
chaochao wong
- [BioC] Illumina bead arrays
Johnstone, Alice
- [BioC] Problem with some exonmap X.to.Y functions
Crispin Miller
- [BioC] installation problem with Windows binary cellHTS_1.6.0.zip
Klaus-Peter Pleissner
- [BioC] Reading Agilent files using read.maimages
Scott Reagan Franklin
- [BioC] LumiR
Giovanni Coppola
- [BioC] LumiR error
Giovanni Coppola
- [BioC] Normalizing data from different kinds of Affymetrix arrays
mswierniak
- [BioC] Questions about gene identifiers and probesets regulation
Chunyan Liu
- [BioC] function to find coodinates in an array
Ana Conesa
- [BioC] Nimblegen and Ringo package
João Fadista
- [BioC] Questions about gene identifiers and probesets regulation
Ana Conesa
- [BioC] biomaRt-chromosomal positions
P.A.C._t_Hoen at lumc.nl
- [BioC] LumiR
Pan Du
- [BioC] MAS5 statistics
Brooks, Anthony B
- [BioC] AnnBuilder problem with custom List of genes
claudio.is at libero.it
- [BioC] globaltest - multinomial model
Hans-Ulrich Klein
- [BioC] AnnBuilder problem with custom List of genes
John Zhang
- [BioC] AnnBuilder problem with custom List of genes
claudio.is at libero.it
- [BioC] movie-quality card
pagani at ebssa.com.mx
- [BioC] Supported CDF libraries
Andy Reynolds
- [BioC] AnnBuilder problem with custom List of genes
claudio.is at libero.it
- [BioC] [R] function to find coodinates in an array
Marc Schwartz
- [BioC] appropriate statistical test for post-array analysis
r.athanasiadou
- [BioC] question regarding unbalanced two way anova with interaction term
James Anderson
- [BioC] Error using yeastPkgBuilder (AnnBuilder package)
melany black
- [BioC] Error using yeastPkgBuilder (AnnBuilder package)
melany black
- [BioC] Legal software sales
Michael Andrade
- [BioC] biomaRt-chromosomal positions
Wolfgang Huber
- [BioC] error in maanova matest() with affymetrix
Georg Otto
- [BioC] Error in normalize.AffyBatch.invariantset
Markus Schmidberger
- [BioC] Which genes are in the GO count column?
Ingrid H. G. Østensen
- [BioC] Bioconductor Chicago 2007
Denise Scholtens
- [BioC] trouble extracting R code from vignette using example from www.bioconductor.org
Mark W Kimpel
- [BioC] Do we like the same books?
aashishd
- [BioC] Bioconductor Digest, Vol 49, Issue 28
Dr Gyorffy Balazs
- [BioC] KEGGSOAP: color.pathway.by.objects
Alexander C Cambon
- [BioC] Help with lm and predict
Nathan Haigh
- [BioC] KEGGSOAP: color.pathway.by.objects
John Zhang
- [BioC] Legal software sales
Rob Rush
- [BioC] AnnBuilder questions
melany black
- [BioC] AnnBuilder questions
John Zhang
- [BioC] hexbin package installation probs
jhs1jjm at leeds.ac.uk
- [BioC] software for modelling the interaction of genes
Dr Gyorffy Balazs
- [BioC] join mail list
Hongqing Li
- [BioC] Join the Bioconductor mail list
Hongqing Li
- [BioC] question about limma and gcrma
Hongqing Li
- [BioC] Questions about Affymetrix E. Coli arrays
Jenny Drnevich
- [BioC] how to convert a AffyBatch into ExpressionSet object ?
Min Wook Kim
- [BioC] package contribution DEADLINE for BioC 2.1: Aug 27
Seth Falcon
- [BioC] stat/math question on Category vignette
Mark W Kimpel
- [BioC] circadian expression, single cosinor method
Lewin Eisele
- [BioC] GO query
Yogi Sundaravadanam
- [BioC] Charity Project
faith King
- [BioC] goTools: ontoCompare - GO list
Christelle Dantec
- [BioC] OMIM and annaffy
Mayte Suarez-Farinas
- [BioC] problem installing the affy package
Martin O'Gorman
- [BioC] Illumina bead arrays
Ina Hoeschele
- [BioC] problem installing the affy package
Martin O'Gorman
- [BioC] Illumina bead arrays
Mike Smith
- [BioC] limma design
Aurelie Laugraud
- [BioC] Question about inconsistent gene expression
Chunyan Liu
- [BioC] RNA degradation for Illumina
Ina Hoeschele
- [BioC] write to stderr
carol white
- [BioC] Question about topTableF
José Manuel Otero
- [BioC] Exonmap mapping problems
Tore Eriksson
- [BioC] Lumi warning and question
Ingrid H. G. Østensen
- [BioC] Lumi warning and question
Pan Du
- [BioC] Lumi warning and question
Johnstone, Alice
- [BioC] topTable
Lev Soinov
- [BioC] Question about changes in package Ringo
PT Bote
- [BioC] how to convert gene identifier to symbol?
catherine xu
- [BioC] how to convert gene identifier to symbol?
John Zhang
- [BioC] problems rma() with mouse exon affy data in exonmap package
bruce
- [BioC] Measuring similarities beween GO terms graphs
rcaloger
- [BioC] Lumi: Something odd about detectionTh?
Ingrid H. G. Østensen
- [BioC] ontoCompare - 1) notFound 2) GO level
Michaela Gündel
- [BioC] marrayRaw class using read.Agilent function
jhs1jjm at leeds.ac.uk
- [BioC] Schedule for BioC 2.1 release
Seth Falcon
- [BioC] Loess Normalization vs. Dye-Swap Normalization
Ulisses M. Braga-Neto
- [BioC] biomaRt question
Zhu, Dongxiao
- [BioC] Bioconductor, naming of functions
Markus Schmidberger
- [BioC] topTable changes
Sue Jones
- [BioC] 7 Courses: Upcoming September-October 2007 R/S+ schedule by XLSolutions Corp
Sue Turner
- [BioC] getBioC and local repositories
mark garey
- [BioC] affylmGUI: options for 'Export HTML Report'?
Peter Andrews
- [BioC] Hilfe für den kleinen Marcel
Marketing 1A
- [BioC] AnnBuilder and ftp problems
Pedro López-Romero
- [BioC] getGEO invalid multibyte string
Tobias Straub
- [BioC] Analysis of many Flagged spots
Davide Valentini
- [BioC] small sample size,microarray, cross-validation
Roger Liu
Last message date:
Fri Aug 31 17:48:31 CEST 2007
Archived on: Fri Aug 31 17:49:15 CEST 2007
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