[BioC] hexbin package installation probs
James W. MacDonald
jmacdon at med.umich.edu
Wed Aug 22 15:15:02 CEST 2007
Hi John,
jhs1jjm at leeds.ac.uk wrote:
> Hi, I'm using R 2.5.0 on openSUSE 10.2 x86_64 with biocLite packages. I'm wanted
> to use the arrayQuality package with some agilent data. I'm unable to install
> the hexbin package which is a dependency with the following:
>
> lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL /home/
>
> lxuser/hexbin_1.10.0.tar.gz
> * Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5'
> * Installing *source* package 'hexbin' ...
> ** libs
> gfortran -fpic -c hbin.f -o hbin.o
> make: gfortran: Command not found
> make: *** [hbin.o] Error 127
> ERROR: compilation failed for package 'hexbin'
> ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5/hexbin'
> lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL
> /home/lxuser/hexbin_1.10.0.tar.gz *
> Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5'
> * Installing *source* package 'hexbin' ...
> ** libs
> gfortran -fpic -c hbin.f -o hbin.o
> make: gfortran: Command not found
> make: *** [hbin.o] Error 127
> ERROR: compilation failed for package 'hexbin'
> ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5/hexbin'
>
> I have the gcc compiler installed according to YAST.
Yes, but gcc isn't gfortran, which is the error you are seeing.
Installing gfortran would be the first step here.
Best,
Jim
>
> Thanks
> John
>
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--
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
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