[BioC] hexbin package installation probs

jhs1jjm at leeds.ac.uk jhs1jjm at leeds.ac.uk
Wed Aug 22 15:02:20 CEST 2007


Hi, I'm using R 2.5.0 on openSUSE 10.2 x86_64 with biocLite packages. I'm wanted
to use the arrayQuality package with some agilent data. I'm unable to install
the hexbin package which is a dependency with the following:

lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL /home/
                                                                      
lxuser/hexbin_1.10.0.tar.gz
* Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5'
* Installing *source* package 'hexbin' ...
** libs
gfortran   -fpic   -c hbin.f -o hbin.o
make: gfortran: Command not found
make: *** [hbin.o] Error 127
ERROR: compilation failed for package 'hexbin'
** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5/hexbin'
lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL
/home/lxuser/hexbin_1.10.0.tar.gz                                             *
Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5'
* Installing *source* package 'hexbin' ...
** libs
gfortran   -fpic   -c hbin.f -o hbin.o
make: gfortran: Command not found
make: *** [hbin.o] Error 127
ERROR: compilation failed for package 'hexbin'
** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu-library/2.5/hexbin'

I have the gcc compiler installed according to YAST.

Thanks
John



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