August 2007 Archives by author

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Starting: Wed Aug 1 01:39:37 CEST 2007
Ending: Fri Aug 31 17:48:31 CEST 2007
Messages: 441

• [BioC] Reading Agilent files using read.maimages   Gaj Stan (BIGCAT)
• [BioC] How to sort a matrix based on its column names andpreserving the identical column names   alex lam (RI)
• [BioC] Determining an overlapping annotation data subset(overlap/overlaps)   alex lam (RI)
• [BioC] How to get probeset ID   alex lam (RI)
• [BioC] Hilfe für den kleinen Marcel   Marketing 1A
• [BioC] Problems with lumiR/lumiMouseV1   Cei Abreu-Goodger
• [BioC] Questions regarding LUMI   Cei Abreu-Goodger
• [BioC] Questions regarding LUMI   Cei Abreu-Goodger
• [BioC] Problems with lumiR/lumiMouseV1   Cei Abreu-Goodger
• [BioC] illumina data   Cei Abreu-Goodger
• [BioC] Which genes are in the GO count column?   Cei Abreu-Goodger
• [BioC] problem installing the affy package   Cei Abreu-Goodger
• [BioC] I: Two way anova or manova?   Naomi Altman
• [BioC] The criteria to be used in a meta-study by using SAM   Naomi Altman
• [BioC] appropriate statistical test for post-array analysis   Naomi Altman
• [BioC] problems rma() with mouse exon affy data in exonmap package   Naomi Altman
• [BioC] question regarding the effect of mean centering and scaling on classification   James Anderson
• [BioC] question regarding unbalanced two way anova with interaction term   James Anderson
• [BioC] Legal software sales   Michael Andrade
• [BioC] affylmGUI: options for 'Export HTML Report'?   Peter Andrews
• [BioC] Bioconductor Digest, Vol 49, Issue 28   Dr Gyorffy Balazs
• [BioC] software for modelling the interaction of genes   Dr Gyorffy Balazs
• [BioC] Time series analysis using predefined sets of genes   Martino Barenco
• [BioC] [R] function to find coodinates in an array   Henrik Bengtsson
• [BioC] How's ur day?   Betty
• [BioC] problems rma() with mouse exon affy data in exonmap package   Ben Bolstad
• [BioC] Question about changes in package Ringo   PT Bote
• [BioC] Loess Normalization vs. Dye-Swap Normalization   Ulisses M. Braga-Neto
• [BioC] Trying to convert to ExpressionSet object problems   Daniel Brewer
• [BioC] Trying to convert to ExpressionSet object problems   Daniel Brewer
• [BioC] Comparing limma results of two different groupings   Daniel Brewer
• [BioC] Limma: Ignoring sample in differential analysis   Daniel Brewer
• [BioC] DNAcopy plot just one sample   Daniel Brewer
• [BioC] Understanding Bioinformatics   Brodie, Lucy
• [BioC] MAS5 statistics   Brooks, Anthony B
• [BioC] Question on filtering in the Category package   Boel Brynedal
• [BioC] KEGGSOAP: color.pathway.by.objects   Alexander C Cambon
• [BioC] "all" category in annotation data   Marc Carlson
• [BioC] AnnBuilder problem with custom List of genes   Marc Carlson
• [BioC] AnnBuilder problem   Marc Carlson
• [BioC] AnnBuilder problem with custom List of genes   Marc Carlson
• [BioC] Error using yeastPkgBuilder (AnnBuilder package)   Marc Carlson
• [BioC] AnnBuilder questions   Marc Carlson
• [BioC] oligo package locked database question   Benilton Carvalho
• [BioC] affyxparser package question   Benilton Carvalho
• [BioC] affyxparser package question   Benilton Carvalho
• [BioC] affyxparser package question   Benilton Carvalho
• [BioC] affyxparser package question   Benilton Carvalho
• [BioC] oligo package locked database question   Tae-Hoon Chung
• [BioC] affyxparser package question   Tae-Hoon Chung
• [BioC] affyxparser package question   Tae-Hoon Chung
• [BioC] affyxparser package question   Tae-Hoon Chung
• [BioC] affyxparser package question   Tae-Hoon Chung
• [BioC] affyxparser package question   Tae-Hoon Chung
• [BioC] Time series analysis using predefined sets of genes   Ana Conesa
• [BioC] SAM timecourse or what else ?   Ana Conesa
• [BioC] function to find coodinates in an array   Ana Conesa
• [BioC] Questions about gene identifiers and probesets regulation   Ana Conesa
• [BioC] LumiR   Giovanni Coppola
• [BioC] LumiR error   Giovanni Coppola
• [BioC] goTools: ontoCompare - GO list   Christelle Dantec
• [BioC] GDS2eSet problems   Sean Davis
• [BioC] Reading Agilent files using read.maimages   Sean Davis
• [BioC] installation problem with Windows binary cellHTS_1.6.0.zip   Sean Davis
• [BioC] heatmap.2   Jenny Drnevich
• [BioC] heatmap.2   Jenny Drnevich
• [BioC] heatmap.2   Jenny Drnevich
• [BioC] heatmap.2   Jenny Drnevich
• [BioC] Questions about Affymetrix E. Coli arrays   Jenny Drnevich
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Jenny Drnevich
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Jenny Drnevich
• [BioC] topTable   Jenny Drnevich
• [BioC] Illumina bead arrays   Pan Du
• [BioC] LumiR   Pan Du
• [BioC] Lumi warning and question   Pan Du
• [BioC] Lumi warning and question   Pan Du
• [BioC] Lumi warning and question   Pan Du
• [BioC] illumina data   Mark Dunning
• [BioC] Beadarray expression data   Mark Dunning
• [BioC] ControlID Qcinfo slot in Illumina beadarray summary data?   Mark Dunning
• [BioC] beadarray - combing   Mark Dunning
• [BioC] about gcrma   Heidi Dvinge
• [BioC] Distance function and gene expression standardization for clustering   Serge Eifes
• [BioC] FDR of enrichment analysis and other questions on GOstats   Serge Eifes
• [BioC] circadian expression, single cosinor method   Lewin Eisele
• [BioC] Help: Need to Identify all FCS files in a folder (flowCore)   Byron Ellis
• [BioC] flowCore: Prerequisites for norm2Filter?   Byron Ellis
• [BioC] basicplot functionality (flowCore/rflowcyt)   Byron Ellis
• [BioC] Exonmap mapping problems   Tore Eriksson
• [BioC] Nimblegen and Ringo package   João Fadista
• [BioC] Nimblegen and Ringo package   João Fadista
• [BioC] read.phenoData vs read.AnnotatedDataFrame   Seth Falcon
• [BioC] An error of affylmGUI   Seth Falcon
• [BioC] oligo package locked database question   Seth Falcon
• [BioC] exonmap install problem   Seth Falcon
• [BioC] over-representation of specific transcription factors in gene lists   Seth Falcon
• [BioC] oligo package locked database question   Seth Falcon
• [BioC] Saving Median values to an Affy CEL file   Seth Falcon
• [BioC] Saving Median values to an Affy CEL file   Seth Falcon
• [BioC] Access to bioconductor.org   Seth Falcon
• [BioC] html report of hyperGTest question   Seth Falcon
• [BioC] Question on filtering in the Category package   Seth Falcon
• [BioC] pd.mapping 10Karray   Seth Falcon
• [BioC] question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively   Seth Falcon
• [BioC] pd.mapping 10Karray   Seth Falcon
• [BioC] Error in normalize.AffyBatch.invariantset   Seth Falcon
• [BioC] Which genes are in the GO count column?   Seth Falcon
• [BioC] [R] trouble extracting R code from vignette using example from www.bioconductor.org   Seth Falcon
• [BioC] package contribution DEADLINE for BioC 2.1: Aug 27   Seth Falcon
• [BioC] GO query   Seth Falcon
• [BioC] stat/math question on Category vignette   Seth Falcon
• [BioC] problem installing the affy package   Seth Falcon
• [BioC] Question about changes in package Ringo   Seth Falcon
• [BioC] Schedule for BioC 2.1 release   Seth Falcon
• [BioC] getBioC and local repositories   Seth Falcon
• [BioC] One-Color Agilent miRNA microarrays   Francesco Favero
• [BioC] One-Color Agilent miRNA microarrays   Francesco Favero
• [BioC] QVALUE in LIMMA   Alessandro Fazio
• [BioC] Exploding PLASQ Inevitable : slot exprs AffyBatch   Richard Finney
• [BioC] Reading Agilent files using read.maimages   Scott Reagan Franklin
• [BioC] exonmap install problem   Sophie Gallina
• [BioC] [Fwd: exonmap install problem] Resolution note   Sophie Gallina
• [BioC] Problem with some exonmap X.to.Y functions   Sophie Gallina
• [BioC] Problem with some exonmap X.to.Y functions   Sophie Gallina
• [BioC] Trying to convert to ExpressionSet object problems   Robert Gentleman
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   Robert Gentleman
• [BioC] [R] function to find coodinates in an array   Gabor Grothendieck
• [BioC] ontoCompare - 1) notFound 2) GO level   Michaela Gündel
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] Using a custom CDF file   Nathan Haigh
• [BioC] Using a custom CDF file   Nathan Haigh
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] limma - Considering Batch Effect   Nathan Haigh
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] Saving Median values to an Affy CEL file   Nathan Haigh
• [BioC] Help with lm and predict   Nathan Haigh
• [BioC] limma - Considering Batch Effect   Nathan S. Haigh
• [BioC] Comparing limma results of two different groupings   Kasper Daniel Hansen
• [BioC] Saving Median values to an Affy CEL file   Kasper Daniel Hansen
• [BioC] Saving Median values to an Affy CEL file   Kasper Daniel Hansen
• [BioC] Access to bioconductor.org   Kasper Daniel Hansen
• [BioC] How to get probeset ID   Hassane, Duane
• [BioC] hexbin package installation probs   David Henderson
• [BioC] Beadarray expression data   Ina Hoeschele
• [BioC] Illumina bead arrays   Ina Hoeschele
• [BioC] Illumina bead arrays   Ina Hoeschele
• [BioC] Illumina bead arrays   Ina Hoeschele
• [BioC] RNA degradation for Illumina   Ina Hoeschele
• [BioC] Time series analysis using predefined sets of genes   Hooiveld, Guido
• [BioC] Time series analysis using predefined sets of genes   Hooiveld, Guido
• [BioC] Time series analysis using predefined sets of genes   Hooiveld, Guido
• [BioC] Exploding PLASQ Inevitable : slot exprs AffyBatch   pingzhao Hu
• [BioC] Exploding PLASQ Inevitable : slot exprs AffyBatch   Wolfgang Huber
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   Wolfgang Huber
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   Wolfgang Huber
• [BioC] Question on filtering in the Category package   Wolfgang Huber
• [BioC] biomaRt-chromosomal positions   Wolfgang Huber
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Wolfgang Huber
• [BioC] Help: Need to Identify all FCS files in a folder (flowCore)   M. Jankowski
• [BioC] Extract raw numerical data from a flowframe?   M. Jankowski
• [BioC] Extract raw numerical data from a flowframe?   M. Jankowski
• [BioC] basicplot functionality (flowCore/rflowcyt)   M. Jankowski
• [BioC] flowCore: Prerequisites for norm2Filter?   M. Jankowski
• [BioC] flowCore: Prerequisites for norm2Filter?   M. Jankowski
• [BioC] flowCore: Prerequisites for norm2Filter?   M. Jankowski
• [BioC] basicplot functionality (flowCore/rflowcyt)   M. Jankowski
• [BioC] basicplot functionality (flowCore/rflowcyt)   M. Jankowski
• [BioC] basicplot functionality (flowCore/rflowcyt)   M. Jankowski
• [BioC] Special Characters? (flowViz | R question)   M. Jankowski
• [BioC] read.phenoData vs read.AnnotatedDataFrame   Johnstone, Alice
• [BioC] ControlID Qcinfo slot in Illumina beadarray summary data?   Johnstone, Alice
• [BioC] Pulling significant gene ids from beadarray data   Johnstone, Alice
• [BioC] Illumina bead arrays   Johnstone, Alice
• [BioC] Lumi warning and question   Johnstone, Alice
• [BioC] topTable changes   Sue Jones
• [BioC] Reading Agilent files using read.maimages   Misha Kapushesky
• [BioC] beadarray - combing   Krys Kelly
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Min Wook Kim
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Min Wook Kim
• [BioC] passing "main" argument to function plotPCA of affycoretools   Mark W Kimpel
• [BioC] over-representation of specific transcription factors in gene lists   Mark W Kimpel
• [BioC] 2x2 factorial in Limma   Mark W Kimpel
• [BioC] trouble extracting R code from vignette using example from www.bioconductor.org   Mark W Kimpel
• [BioC] stat/math question on Category vignette   Mark W Kimpel
• [BioC] Charity Project   faith King
• [BioC] globaltest - multinomial model   Hans-Ulrich Klein
• [BioC] question regarding unbalanced two way anova with interactionterm   Kuhn, Max
• [BioC] Needed help on maanova fitmaanova function   Marcelo Laia
• [BioC] Needed help on maanova fitmaanova function   Marcelo Laia
• [BioC] Help on basic skills on R and maanova   Marcelo Laia
• [BioC] Questions regarding LUMI   L.N. Laredj
• [BioC] Questions regarding LUMI   L.N. Laredj
• [BioC] limma design   Aurelie Laugraud
• [BioC] Extract raw numerical data from a flowframe?   Nolwenn LeMeur
• [BioC] Reading Agilent files using read.maimages   Nolwenn LeMeur
• [BioC] An error of affylmGUI   Daofeng Li
• [BioC] An error of affylmGUI   Daofeng Li
• [BioC] Time series analysis using predefined sets of genes   Daofeng Li
• [BioC] join mail list   Hongqing Li
• [BioC] Join the Bioconductor mail list   Hongqing Li
• [BioC] question about limma and gcrma   Hongqing Li
• [BioC] question about limma and gcrma   Hongqing Li
• [BioC] Questions about gene identifiers and probesets regulation   Chunyan Liu
• [BioC] Question about inconsistent gene expression   Chunyan Liu
• [BioC] small sample size,microarray, cross-validation   Roger Liu
• [BioC] Beadarray expression data   Simon Luo
• [BioC] AnnBuilder and ftp problems   Pedro López-Romero
• [BioC] How to get probeset ID   James MacDonald
• [BioC] Saving Median values to an Affy CEL file   James MacDonald
• [BioC] limma - Considering Batch Effect   James MacDonald
• [BioC] help for   James MacDonald
• [BioC] Problems with affycomp - quantile.default   James MacDonald
• [BioC] about gcrma   James W. MacDonald
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   James W. MacDonald
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   James W. MacDonald
• [BioC] Using a custom CDF file   James W. MacDonald
• [BioC] Saving Median values to an Affy CEL file   James W. MacDonald
• [BioC] usage of "all" category in annotation data   James W. MacDonald
• [BioC] limma - Considering Batch Effect   James W. MacDonald
• [BioC] Background Correct Error   James W. MacDonald
• [BioC] outlier detection of fit.li.wong   James W. MacDonald
• [BioC] Problems with affycomp - quantile.default   James W. MacDonald
• [BioC] Problems with affycomp - quantile.default   James W. MacDonald
• [BioC] Question on filtering in the Category package   James W. MacDonald
• [BioC] question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively   James W. MacDonald
• [BioC] Questions about gene identifiers and probesets regulation   James W. MacDonald
• [BioC] MAS5 statistics   James W. MacDonald
• [BioC] Supported CDF libraries   James W. MacDonald
• [BioC] error in maanova matest() with affymetrix   James W. MacDonald
• [BioC] Error in normalize.AffyBatch.invariantset   James W. MacDonald
• [BioC] Which genes are in the GO count column?   James W. MacDonald
• [BioC] Which genes are in the GO count column?   James W. MacDonald
• [BioC] Which genes are in the GO count column?   James W. MacDonald
• [BioC] hexbin package installation probs   James W. MacDonald
• [BioC] Join the Bioconductor mail list   James W. MacDonald
• [BioC] stat/math question on Category vignette   James W. MacDonald
• [BioC] GO query   James W. MacDonald
• [BioC] question about limma and gcrma   James W. MacDonald
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   James W. MacDonald
• [BioC] question about limma and gcrma   James W. MacDonald
• [BioC] OMIM and annaffy   James W. MacDonald
• [BioC] problem installing the affy package   James W. MacDonald
• [BioC] Question about topTableF   James W. MacDonald
• [BioC] Lumi warning and question   James W. MacDonald
• [BioC] problems rma() with mouse exon affy data in exonmap package   James W. MacDonald
• [BioC] html report of hyperGTest question   Siarhei Manakou
• [BioC] read.phenoData vs read.AnnotatedDataFrame   Steven McKinney
• [BioC] GDS2eSet problems   Mcmahon, Wyatt
• [BioC] GDS2eSet problems   Mcmahon, Wyatt
• [BioC] simpleaffy QCstats and affyQAReport repost   Crispin Miller
• [BioC] simpleaffy QCstats and affyQAReport repost   Crispin Miller
• [BioC] Problem with some exonmap X.to.Y functions   Crispin Miller
• [BioC] Problem with some exonmap X.to.Y functions   Crispin Miller
• [BioC] Problem with some exonmap X.to.Y functions   Crispin Miller
• [BioC] getGEO invalid multibyte string   Saroj Mohapatra
• [BioC] Determining an overlapping annotation data subset (overlap/overlaps)   Stephen Montgomery
• [BioC] Trying to convert to ExpressionSet object problems   Martin Morgan
• [BioC] Problems with expresso   Martin Morgan
• [BioC] create an new AnnotatedDataFrame   Martin Morgan
• [BioC] GDS2eSet problems   Martin Morgan
• [BioC] RE : create an new AnnotatedDataFrame   Martin Morgan
• [BioC] DNAcopy plot just one sample   Martin Morgan
• [BioC] AnnBuilder problem   Martin Morgan
• [BioC] write to stderr   Martin Morgan
• [BioC] how to convert gene identifier to symbol?   Martin Morgan
• [BioC] Bioconductor, naming of functions   Martin Morgan
• [BioC] AnnBuilder and ftp problems   Martin Morgan
• [BioC] getGEO invalid multibyte string   Martin Morgan
• [BioC] "all" category in annotation data   Michael Newton
• [BioC] usage of "all" category in annotation data   Michael Newton
• [BioC] software for modelling the interaction of genes   Nico-v
• [BioC] software for modelling the interaction of genes   Nico-v
• [BioC] I: Two way anova or manova?   Mª José Nueda
• [BioC] problem installing the affy package   Martin O'Gorman
• [BioC] problem installing the affy package   Martin O'Gorman
• [BioC] Question about inconsistent gene expression   Michal Okoniewski
• [BioC] Exonmap mapping problems   Michal Okoniewski
• [BioC] [R] function to find coodinates in an array   Moshe Olshansky
• [BioC] Question about topTableF   José Manuel Otero
• [BioC] heatmap.2   Benjamin Otto
• [BioC] error in maanova matest() with affymetrix   Georg Otto
• [BioC] heatmap.2   Kauer Maximilian Otto
• [BioC] Determining an overlapping annotation data subset (overlap/overlaps)   Herve Pages
• [BioC] Determining an overlapping annotation data subset (overlap/overlaps)   Herve Pages
• [BioC] Access to bioconductor.org   Herve Pages
• [BioC] "all" category in annotation data   Herve Pages
• [BioC] goTools: ontoCompare - GO list   Paquet, Agnes
• [BioC] ontoCompare - 1) notFound 2) GO level   Paquet, Agnes
• [BioC] Background Correct Error   Jason Pear
• [BioC] [R] function to find coodinates in an array   François Pinard
• [BioC] installation problem with Windows binary cellHTS_1.6.0.zip   Klaus-Peter Pleissner
• [BioC] Supported CDF libraries   Andy Reynolds
• [BioC] Nimblegen and Ringo package   Todd Richmond
• [BioC] Nimblegen and Ringo package   Todd Richmond
• [BioC] Illumina bead arrays   Matt Ritchie
• [BioC] nimblegen aCGH   Mark Robinson
• [BioC] Legal software sales   Rob Rush
• [BioC] basicplot functionality (flowCore/rflowcyt)   Deepayan Sarkar
• [BioC] basicplot functionality (flowCore/rflowcyt)   Deepayan Sarkar
• [BioC] An error of affylmGUI   Keith Satterley
• [BioC] Special Characters? (flowViz | R question)   Keith Satterley
• [BioC] affylmGUI: options for 'Export HTML Report'?   Keith Satterley
• [BioC] Problems with expresso   Markus Schmidberger
• [BioC] Problems with affycomp - quantile.default   Markus Schmidberger
• [BioC] Problems with affycomp - quantile.default   Markus Schmidberger
• [BioC] Problems with affycomp - quantile.default   Markus Schmidberger
• [BioC] Error in normalize.AffyBatch.invariantset   Markus Schmidberger
• [BioC] Error in normalize.AffyBatch.invariantset   Markus Schmidberger
• [BioC] Bioconductor, naming of functions   Markus Schmidberger
• [BioC] Bioconductor Chicago 2007   Denise Scholtens
• [BioC] [R] function to find coodinates in an array   Marc Schwartz
• [BioC] [R] function to find coodinates in an array   Marc Schwartz
• [BioC] simpleaffy QCstats and affyQAReport repost   Matt Settles
• [BioC] circadian expression, single cosinor method   William Shannon
• [BioC] Measuring similarities beween GO terms graphs   William Shannon
• [BioC] Measuring similarities beween GO terms graphs   William Shannon
• [BioC] Measuring similarities beween GO terms graphs   William Shannon
• [BioC] RNA degradation for Illumina   Wei Shi
• [BioC] KEGG package   Weiwei Shi
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   Oleg Sklyar
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   Oleg Sklyar
• [BioC] Illumina bead arrays   Mike Smith
• [BioC] Loop design -> inferring   Gordon Smyth
• [BioC] problems in limma   Gordon K Smyth
• [BioC] One-Color Agilent miRNA microarrays   Gordon K Smyth
• [BioC] One-Color Agilent miRNA microarrays   Gordon K Smyth
• [BioC] One-Color Agilent miRNA microarrays   Gordon K Smyth
• [BioC] filter   Lev Soinov
• [BioC] VSN and Quantile   Lev Soinov
• [BioC] topTable   Lev Soinov
• [BioC] topTable   Lev Soinov
• [BioC] biomaRt question   Steffen
• [BioC] getGEO invalid multibyte string   Tobias Straub
• [BioC] getGEO invalid multibyte string   Tobias Straub
• [BioC] OMIM and annaffy   Mayte Suarez-Farinas
• [BioC] Beadarray expression data   Yogi Sundaravadanam
• [BioC] Beadarray expression data   Yogi Sundaravadanam
• [BioC] illumina data   Yogi Sundaravadanam
• [BioC] GO query   Yogi Sundaravadanam
• [BioC] Cross validation   Ido M. Tamir
• [BioC] Reading Agilent files using read.maimages   Steve Taylor
• [BioC] Reading Agilent files using read.maimages   Steve Taylor
• [BioC] Reading Agilent files using read.maimages   Steve Taylor
• [BioC] Reading Agilent files using read.maimages   Steve Taylor
• [BioC] Using Ringo   Joern Toedling
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   Joern Toedling
• [BioC] Nimblegen and Ringo package   Joern Toedling
• [BioC] Question about changes in package Ringo   Joern Toedling
• [BioC] The criteria to be used in a meta-study by using SAM   Alex Tsoi
• [BioC] pd.mapping 10Karray   Marianne Tuefferd
• [BioC] 7 Courses: Upcoming September-October 2007 R/S+ schedule by XLSolutions Corp   Sue Turner
• [BioC] SAM timecourse or what else ?   Davide Valentini
• [BioC] Analysis of many Flagged spots   Davide Valentini
• [BioC] heatmap.2   Artur Veloso
• [BioC] heatmap.2   Artur Veloso
• [BioC] heatmap.2   Artur Veloso
• [BioC] pd.mapping 10Karray   Tobias Verbeke
• [BioC] how to get fewer cut points with DNAcopy or GLAD   Wittner, Ben, Ph.D.
• [BioC] Loop design -> inferring   Yannick Wurm
• [BioC] Loop design -> inferring   Yannick Wurm
• [BioC] Cross validation   Li Xiao
• [BioC] outlier detection of fit.li.wong   Yi Xing
• [BioC] KEGG package   Yihuan Xu
• [BioC] AnnBuilder problem   Yihuan Xu
• [BioC] create an new AnnotatedDataFrame   GHAVI-HELM Yad
• [BioC] RE : create an new AnnotatedDataFrame   GHAVI-HELM Yad
• [BioC] KEGG package   John Zhang
• [BioC] AnnBuilder problem with custom List of genes   John Zhang
• [BioC] KEGGSOAP: color.pathway.by.objects   John Zhang
• [BioC] AnnBuilder questions   John Zhang
• [BioC] how to convert gene identifier to symbol?   John Zhang
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   Weiyin Zhou
• [BioC] biomaRt question   Zhu, Dongxiao
• [BioC] Do we like the same books?   aashishd
• [BioC] I: Two way anova or manova?   simonegri at alice.it
• [BioC] function to find coodinates in an array   lgautier at altern.org
• [BioC] how to convert a AffyBatch into ExpressionSet object ?   lgautier at altern.org
• [BioC] question in siggenes : how to have all list of gnes and thre p value   el mousselly antra
• [BioC] Error using yeastPkgBuilder (AnnBuilder package)   melany black
• [BioC] Error using yeastPkgBuilder (AnnBuilder package)   melany black
• [BioC] AnnBuilder questions   melany black
• [BioC] problems rma() with mouse exon affy data in exonmap package   bruce
• [BioC] problems rma() with mouse exon affy data in exonmap package   bruce
• [BioC] movie-quality card   pagani at ebssa.com.mx
• [BioC] topTable   J.delasHeras at ed.ac.uk
• [BioC] topTable changes   J.delasHeras at ed.ac.uk
• [BioC] GO query   mcarlson at fhcrc.org
• [BioC] Lerne heisse Singles aus Deiner Umgebung kennen ( gelten Das)   flux5220
• [BioC] getBioC and local repositories   mark garey
• [BioC] getBioC and local repositories   mark garey
• [BioC] nimblegen aCGH   yoo hoo
• [BioC] help for   ghxiao at hrbmu.edu.cn
• [BioC] Du willst Heute noch realen Sex haben? ( Augen langen)   those1559 at indiatimes.com
• [BioC] Measuring similarities beween GO terms graphs   Li.Long at isb-sib.ch
• [BioC] hexbin package installation probs   jhs1jjm at leeds.ac.uk
• [BioC] marrayRaw class using read.Agilent function   jhs1jjm at leeds.ac.uk
• [BioC] AnnBuilder problem with custom List of genes   claudio.is at libero.it
• [BioC] AnnBuilder problem with custom List of genes   claudio.is at libero.it
• [BioC] AnnBuilder problem with custom List of genes   claudio.is at libero.it
• [BioC] globaltest - multinomial model   J.J.Goeman at lumc.nl
• [BioC] How to sort a matrix based on its column names andpreserving the identical column names   J.Oosting at lumc.nl
• [BioC] biomaRt-chromosomal positions   P.A.C._t_Hoen at lumc.nl
• [BioC] Normalizing data from different kinds of Affymetrix arrays   mswierniak
• [BioC] Access to bioconductor.org   pingou
• [BioC] Access to bioconductor.org   pingou
• [BioC] appropriate statistical test for post-array analysis   r.athanasiadou
• [BioC] Measuring similarities beween GO terms graphs   rcaloger
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   mete at seas.upenn.edu
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   mete at seas.upenn.edu
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   mete at seas.upenn.edu
• [BioC] cannot open file './', reason 'Permission denied' in: file(file, "r")   mete at seas.upenn.edu
• [BioC] heatmap.2   Matthias.Kohl at stamats.de
• [BioC] oligo package locked database question   thchung at tgen.org
• [BioC] Measuring similarities beween GO terms graphs   prsmra01 at uniroma2.it
• [BioC] simpleaffy QCstats and affyQAReport   msettles at vandals.uidaho.edu
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   carol white
• [BioC] heatmap.2   carol white
• [BioC] How to sort a matrix based on its column names and preserving the identical column names   carol white
• [BioC] heatmap.2   carol white
• [BioC] Cross validation   carol white
• [BioC] write to stderr   carol white
• [BioC] question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively   chaochao wong
• [BioC] how to convert gene identifier to symbol?   catherine xu
• [BioC] about gcrma   chen zhong
• [BioC] Which genes are in the GO count column?   Ingrid H. G. Østensen
• [BioC] Which genes are in the GO count column?   Ingrid H. G. Østensen
• [BioC] Which genes are in the GO count column?   Ingrid H. G. Østensen
• [BioC] Which genes are in the GO count column?   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi warning and question   Ingrid H. G. Østensen
• [BioC] Lumi: Something odd about detectionTh?   Ingrid H. G. Østensen
• [BioC] Lumi: Something odd about detectionTh?   Ingrid H. G. Østensen

Last message date: Fri Aug 31 17:48:31 CEST 2007
Archived on: Fri Aug 31 17:49:15 CEST 2007

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