[BioC] Questions regarding LUMI

[Cei Abreu-Goodger]

Sorry, see ?lumiR for help

On Fri, 3 Aug 2007, Cei Abreu-Goodger wrote:

>
> Dear Leila,
>
> The data() command is for loading data sets that are packaged with other 
> programs. What you want to be using is something like:
>
> rawLumi <- lumiR('Leila_90samples_...._geneprofile.txt', ...)
>
> see ?rawLumi for help
>
> Cei
>
>
> On Fri, 3 Aug 2007, L.N. Laredj wrote:
>
>> Dear Sir/Madam,
>> 
>> I have just been given my input raw data for my array exp using the
>> Illumina platform. I see that the example data file on the lumi programme
>> is an RDA file - I was able to run and understand the commands for
>> background correction and normalisation fine, but I am still unable to make
>> the programme read my input data - provided in a text format. Example: When
>> typing: >data('Leila_90samples_...._geneprofile.txt') I get a warning
>> message that the data could not be found.
>> 
>> I realise this is a trivial problem but I would really appreciate if you
>> could help me clarify it.
>> 
>> Looking forward to hearing from you
>> 
>> Best regards,
>> Leila
>> 
>> -- 
>> Leila N Laredj
>> PhD Candidate
>> Department of Pathology
>> University of Cambridge
>> Tel. (01223) 333735
>> 
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>> 
>


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