[BioC] Problems with lumiR/lumiMouseV1

[Cei Abreu-Goodger]

Hello all,

I saw a couple of emails on the list with this problem regarding Illumina 
BeadChip Mouse-6 data. My problem is that for some probes I end up with
only a nuID, with no mapping to the manufacturer's TargetID or ProbeID, 
and no transcript annotation. In some cases the annotation file from 
Illumina's web page would allow me to fill in this missing annotation, but 
it becomes very tedious since I don't have the TargetID or ProbeID.

Does someone know if there is an update to lumiMouseV1 planned?

Thanks,

Cei

--- output ---

> rawLumi <- lumiR(fileName, detectionTh = 0.95, lib = 'lumiMouseV1')
Loading required package: lumiMouseV1
Warning messages:
1: Some identifiers cannot be found in the lumiMouseV1! in: 
addNuId2lumi(x.lumi, lib = lib)
2: Duplicated IDs found and were merged! in: addNuId2lumi(x.lumi, lib = 
lib)

-- sessionInfo --

> sessionInfo()
R version 2.5.1 (2007-06-27)
x86_64-unknown-linux-gnu

locale:
C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
lumiMouseV1        lumi    annotate        mgcv        affy      affyio
     "1.2.0"     "1.2.0"    "1.14.1"    "1.3-25"    "1.14.2"     "1.4.1"
     Biobase
    "1.14.1"




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