[BioC] exonmap install problem
Sophie Gallina
sfi at good.ibl.fr
Mon Aug 6 17:41:42 CEST 2007
Hi,
I have got this message when installing exonmap on linux :
** building package indices ...
Error in load(zfile, envir = envir) : ReadItem: unknown type 25
I downloaded the file exonmap_1.0.05.tar.gz today from bioconductor site
http://bioconductor.org/packages/2.0/bioc/html/exonmap.html
and try to install it using the command
R CMD INSTALL ./exonmap_1.0.05.tar.gz
================================
Here is the complete trace :
# R CMD INSTALL ./exonmap_1.0.05.tar.gz
* Installing *source* package 'exonmap' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: genefilter
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
Loading required package: DBI
Loading required package: plier
PLIER V 1.3.1
See: http://www.affymetrix.com for the algorithm
For details on the R port:
http://bioinformatics.picr.man.ac.uk
mailto: microarray at picr.man.ac.uk
** help
>>> Building/Updating help pages for package 'exonmap'
Formats: text html latex example
PC-class text html latex example
Splanova-class text html latex example
X.toY text html latex example
array.subset text html latex example
gene.details text html latex example
gene.legend text html latex example
gene.strip text html latex example
gene.to.exon.probeset text html latex example
group.indices text html latex example
pc text html latex example
plot.gene text html latex example
plot.gene.graph text html latex example
probeset.stats text html latex example
probesets.in.range text html latex example
read.exon text html latex example
select.probewise text html latex example
splanova text html latex example
splicing.index text html latex example
x.rma text html latex
xmapDatabase text html latex example
xmapGene text html latex example
** building package indices ...
Error in load(zfile, envir = envir) : ReadItem: unknown type 25
Execution halted
ERROR: installing package indices failed
** Removing '/usr/lib64/R/library/exonmap'
#
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Sophie.Gallina at good.ibl.fr
CNRS UMR 8090 - http://www-good.ibl.fr
Génomique et physiologie moléculaire des maladies métaboliques
I.B.L - 1 rue du Pr Calmette, B.P.245, 59019 Lille Cedex
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