[BioC] An error of affylmGUI

[Keith Satterley]

Hi Daofeng,

I have the same versions of packages as you and it all works fine. I don't 
recognise the error messages you are getting. Have you installed Tcl/Tk on your 
Windows computer? I don't have experience of using it in the Chinese Locale. My 
sessionInfo is below:

===================================
 > sessionInfo()
R version 2.5.1 (2007-06-27)
i386-pc-mingw32

locale:
LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252

attached base packages:
[1] "tools"     "tcltk"     "stats"     "graphics"  "grDevices" "datasets" 
"utils"     "methods"
[9] "base"

other attached packages:
affylmGUI      affy    affyio   Biobase     limma
  "1.10.4"  "1.14.2"   "1.4.1"  "1.14.1"  "2.10.5"
===================================

The affylmGUI web page at

http://bioinf.wehi.edu.au/affylmGUI/

was updated recently (except for R-2.5.1) and gives clear descriptions on all 
the set up needed for Windows Mac and Linux,

hope that helps,

Keith

========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia
=======================

Daofeng Li wrote:
> Hi list,
> 
> can anyone told me how this error could happen and how to solve this?
> 
> To begin, type affylmGUI() or use the pull-down menu.
> 
> Searching for user-defined affylmGUI commands in
> C:/PROGRA~1/R/R-25~1.1/library/affylmGUI/etc ...
> Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"),
> class = "tclObj") :
>         [tcl] invalid command name ".1.1.9".
> 
> Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"),
> class = "tclObj") :
>         [tcl] invalid command name ".1.1.12".
>> sessionInfo()
> R version 2.5.1 (2007-06-27)
> i386-pc-mingw32
> 
> locale:
> LC_COLLATE=Chinese_People's Republic of
> China.936;LC_CTYPE=Chinese_People's Republic of
> China.936;LC_MONETARY=Chinese_People's Republic of
> China.936;LC_NUMERIC=C;LC_TIME=Chinese_People's Republic of China.936
> 
> attached base packages:
> [1] "tools"     "tcltk"     "stats"     "graphics"  "grDevices"
> "utils"     "datasets"  "methods"   "base"
> 
> other attached packages:
> mouse4302cdf    affylmGUI         affy       affyio      Biobase        limma
>     "1.16.0"     "1.10.4"     "1.14.2"      "1.4.1"     "1.14.1"     "2.10.5"
> 
> Thanks!
>