[BioC] GO query

[James W. MacDonald]

Hi Yogi,

Yogi Sundaravadanam wrote:
>  
> 
> Hi all
> 
>  
> 
> I was wondering if anyone would please help me with this.
> 
>  
> 
> I have a set of differentially expressed genes that I am interested in
> and I want to find the GO ontologies they are associated with. Is there
> a way I would be able to do this in any bioconductor package? I’d be
> very grateful for this

That question is pretty ambiguous, and I can think of several answers 
that might be applicable. Are you asking:

a.) Given a set of genes, I want to know the GO terms associated with each.

b.) Given a set of genes, I want to know if there are any GO terms that 
are over-represented.

c.) Given a set of genes, I want to know what GO ontologies the genes 
map to.

d.) Something else?

Can you re-specify your question to be a bit less ambiguous?

Best,

Jim


> 
>  
> 
> Thanks
> 
> Yogi 
> 
>  
> 
>  
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623