[BioC] ControlID Qcinfo slot in Illumina beadarray summary data?

[Johnstone, Alice]

Hi
Stuck at the beginning(!) reading in my Illumina summary data using:

> dataFile="ROD-AJ-BeadStudioV2_Sample_Probe_Profile.csv"
> qcFile="ControlGeneProfile.txt"
> sampleSheet="sampleSheet.txt" 
>
BSData<-readBeadSummaryData(dataFile,qcFile=qcFile,sampleSheet=sampleShe
et,
+
header=TRUE,ProbeID="TargetID",skip=7,columns=list(exprs="AVG_Signal",Be
adStDev="BEAD_STDEV",
+
NoBeads="Avg_NBEADS"),qc.columns=list(ControlID="TargetID",exprs="AVG.Si
gnal",Detection="Detection"),
+ qc.sep=",",sep=",")
Did not find a slot called : ControlID

In the help for readBeadSummaryData it has a ControlID slot for the
qcFile listed, am I missing something?

> sessionInfo()
R version 2.5.1 (2007-06-27) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_New Zealand.1252;LC_CTYPE=English_New
Zealand.1252;LC_MONETARY=English_New
Zealand.1252;LC_NUMERIC=C;LC_TIME=English_New Zealand.1252

attached base packages:
[1] "grid"      "tools"     "stats"     "graphics"  "grDevices" "utils"

[7] "datasets"  "methods"   "base"     

other attached packages:
   beadarray beadarraySNP  quantsmooth      lodplot     quantreg
SparseM 
     "1.4.0"      "1.2.0"      "1.2.0"        "1.1"       "4.08"
"0.73" 
        affy       affyio  geneplotter      lattice     annotate
Biobase 
    "1.14.2"      "1.4.1"     "1.14.0"    "0.15-11"     "1.14.1"
"1.14.1" 
       limma 
    "2.10.5"  




 Thanks

Alice Johnstone
PhD Candidate
Institute of Environmental Science and Research Ltd
Kenepuru Science Centre
34 Kenepuru Drive
PO Box 50-348
Porirua
New Zealand
Tel:  + 64 4 914-0717
Fax: + 64 4 914-0770