[BioC] about gcrma

[James W. MacDonald]

Hi Zhongzhong,

Last time I checked Affy wasn't distributing the probe_tab files for the 
HT assays. However, I just checked today and they are on the website, so 
I built the probe packages for both the hthgu133a and hthgu133b plates.

You don't say what OS you are on. If you are on *nix, or on another OS 
and have the ability to build packages from source, I can send you the 
source package. If not, I am going to be sending the packages to the 
folks in Seattle and depending on build times and what OS you are on, 
they should be available in the next few days or so.

Best,

Jim



chen zhong wrote:
> Dear bioconductor,
>  
>  I am using gcrma to analyze a bunch of Affy arrays and have the following
>  error:
>  
>  Computing affinities[1] "Checking to see if your internet connection works..."
>  [1] "Environment hthgu133acdf was not found in the Bioconductor repository."
>  [1] "Checking to see if your internet connection works..."
>  [1] "Environment hthgu133aprobe was not found in the Bioconductor repository."
>  Error in get(x, envir, mode, inherits) : variable "hthgu133aprobe" was not found
>  
>  
>  I did not find hthgu133aprobe package in bioconductor. So could you give me the package or suggest me to do another way to do it. Thanks.
>  
>  Sincerely,
>  Zhongzhong 
>  
>  2007-08-02 
> 
>        
> ---------------------------------
> ÇÀ×¢ÑÅ»¢Ãâ·ÑÓÊÏä3.5GÈÝÁ¿£¬20M¸½¼þ£¡ 
> 	[[alternative HTML version deleted]]
> 
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623