[BioC] oligo package locked database question

[Seth Falcon]

Hi,

<thchung at tgen.org> writes:
> The sessionInfo() was like this:
>
> R version 2.5.1 (2007-06-27) 
> x86_64-unknown-linux-gnu 
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"    
> [7] "datasets"  "methods"   "base"     
>
> other attached packages:
>                 oligo                affyio               Biobase 
>             "1.0.2-6"               "1.4.1"              "1.14.0" 
> BufferedMatrixMethods        BufferedMatrix               RSQLite 
>               "1.0.0"               "1.0.1"               "0.5-4" 
>                   DBI 
>               "0.2-3" 

You're RSQLite is out of date, the current version is 0.5-6, so I
would recommend updating and then seeing if the problem persists.  If
it does, can you also provide the output of:

        library("RSQLite")
        dbGetInfo(SQLite())$clientVersion

+ seth

-- 
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
BioC: http://bioconductor.org/
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