September 2003 Archives by date

• Messages sorted by: [ thread ] [ subject ] [ author ]
• More info on this list...

Starting: Mon Sep 1 03:16:15 MEST 2003
Ending: Tue Sep 30 23:45:32 MEST 2003
Messages: 230

• [BioC] (no subject)   bioconductor-bounces at stat.math.ethz.ch
• [BioC] Diagnostic plots error   michael watson (IAH-C)
• [BioC] Minimum expression threshold?   Bob
• [BioC] lowess vs. loess   nataraja at mit.edu
• [BioC] reg Golub Data set   Rafael A. Irizarry
• [BioC] Affymetrix errormodel?   Rafael A. Irizarry
• [BioC] Quantile normalization.   Phguardiol at aol.com
• [BioC] Quantile normalization.   Stephen Nyangoma
• [BioC] reg Golub Data set   w.huber at dkfz-heidelberg.de
• [BioC] reg Golub Data set   Dibakar Ray
• [BioC] Affymetrix errormodel?   w.huber at dkfz-heidelberg.de
• [BioC] m430aprobe   Akil Merchant
• [BioC] myself and ID-arrays   Kurt Sys
• [BioC] Defining Weights in marrayNorm.   Gordon Smyth
• [BioC] m430aprobe   w.huber at dkfz-heidelberg.de
• [BioC] normalising different chip types   w.huber at dkfz-heidelberg.de
• [BioC] lowess vs. loess   Gordon Smyth
• [BioC] Minimum expression threshold?   w.huber at dkfz-heidelberg.de
• [BioC] normalising different chip types   Margaret Gardiner-Garden
• [BioC] lowess vs. loess [marrayNorm and limma]   Gordon Smyth
• [BioC] Swirl zebrafish TIFF images   Jean Yee Hwa Yang
• [BioC] Swirl zebrafish TIFF images   Dave Waddell
• [BioC] RE: Bioconductor web site will be down   John Zhang
• [BioC] GC-RMA on m430a chips   Akil Merchant
• [BioC] Seeking collaboration for an opensource data analysis interface project   Andrea Splendiani
• [BioC] Library AnnBuilder problem   Sean Davis
• [BioC] RE: Bioconductor web site will be down   Johannes Hüsing
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] installing affy environment   Straubhaar, Juerg
• [BioC] installing affy environment   Jeff Gentry
• [BioC] Library AnnBuilder problem   John Zhang
• [BioC] Seeking collaboration for an opensource data analysisinterface project   Park, Richard
• [BioC] how long to calculate gcrma on 16 arrays?   Dick Beyer
• [BioC] how long to calculate gcrma on 16 arrays?   FCollin at genelogic.com
• [BioC] how long to calculate gcrma on 16 arrays?   Akil Merchant
• [BioC] installing affy environment   Straubhaar, Juerg
• [BioC] installing affy environment   Straubhaar, Juerg
• [BioC] Advice for analyzing Affy data   Tan, MinHan
• [BioC] how long to calculate gcrma on 16 arrays?   James MacDonald
• [BioC] Advice for analyzing Affy data   James MacDonald
• [BioC] other timimg questions   Rob Dunne
• [BioC] Analysis Interface Projects [was Seeking collaboration for an opensource data analysisinterface project]   Gordon Smyth
• [BioC] Analysis Interface Projects   James Wettenhall
• [BioC] Analysis Interface Projects   Dave Waddell
• [BioC] Re: limma package   Gordon K Smyth
• [BioC] How to get started with bioconductor ?   Luke Whitaker
• [BioC] summary.method: mas / combining with vsn   Hinnerk Boriss
• [BioC] How to get started with bioconductor ?   Robert Gentleman
• [BioC] Re: Single channel normalization   cmprobst
• [BioC] Re: Single channel normalization   Natalie Thorne
• [BioC] How to get started with bioconductor ?   michael watson (IAH-C)
• [BioC] Affy SNP array analysis   James MacDonald
• [BioC] Affy-devel   James MacDonald
• [BioC] Affy-devel   Jeff Gentry
• [BioC] R and ARB   Kurt Sys
• [BioC] R and ARB   A.J. Rossini
• [BioC] R and ARB   Susan Holmes
• [BioC] How to get started with bioconductor ?   Gordon Smyth
• [BioC] Affy SNP array analysis   Vincent Carey 525-2265
• [BioC] R and ARB   Nicholas Lewin-Koh
• [BioC] Help needed to install Rhdf5   ying chen
• [BioC] Help needed to install Rhdf5   ying chen
• [BioC] R and ARB   Nicholas Lewin-Koh
• [BioC] Affy SNP array analysis   Holger Schwender
• [BioC] Affy SNP array analysis   Garrett Frampton
• [BioC] SNP chips   Leslie M. Cope
• [BioC] colors on heatmap   Sean Davis
• [BioC] SNP chips   James MacDonald
• [BioC] limma question   Straubhaar, Juerg
• [BioC] Bug in makecdfenv 1.3.4   James MacDonald
• [BioC] colors on heatmap   Warnes, Gregory R
• [BioC] colors on heatmap   Jean Yee Hwa Yang
• [BioC] Bug in makecdfenv 1.3.4   w.huber at dkfz-heidelberg.de
• [BioC] colors on heatmap   Johannes Freudenberg
• [BioC] Help on factorial experiment analysis using limma   Yuk Fai Leung
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Newbie Affymetrix, specifically "Golub" ?   hdeshmuk at gmu.edu
• [BioC] limma question   Gordon Smyth
• [BioC] post-doc position needed   Junwen wang
• [BioC] Problem installing Biobase   Wiesner Vos
• [BioC] Help on factorial experiment analysis using limma   Gordon Smyth
• [BioC] Problem installing Biobase   Wiesner Vos
• [BioC] RE: limma package   Gordon Smyth
• [BioC] Help on factorial experiment analysis using limma   Yuk Fai Leung
• [BioC] Help on factorial experiment analysis using limma   Gordon K Smyth
• [BioC] Export M vs A Plot Data   Mike Schaffer
• [BioC] gcrma   Michael McDonald
• [BioC] Analysis system requirement   Ben Bolstad
• [BioC] gcrma   Zhijin Wu
• [BioC] affy, probeName and sequence information ?   laurent buffat
• [BioC] Export M vs A Plot Data   michael watson (IAH-C)
• [BioC] affy, probeName and sequence information ?   w.huber at dkfz-heidelberg.de
• [BioC] affy, probeName and sequence information ?   Laurent Gautier
• [BioC] Analysis system requirement   Sek Won Kong, M.D
• [BioC] affy, probeName and sequence information ?   Laurent Gautier
• [BioC] Combining HGU133A & HGU133B data   Laurent Gautier
• [BioC] Combining HGU133A & HGU133B data   Crispin Miller
• [BioC] Combining HGU133A & HGU133B data   w.huber at dkfz-heidelberg.de
• [BioC] Combining HGU133A & HGU133B data   Laurent Gautier
• [BioC] Combining HGU133A & HGU133B data   w.huber at dkfz-heidelberg.de
• [BioC] Problem installing Biobase   Wiesner Vos
• [BioC] gcrma bug fixed   Zhijin Wu
• [BioC] gcrma bug fixed--currently available from CVS   Zhijin Wu
• [BioC] Help on factorial experiment analysis using limma   Ramon Diaz-Uriarte
• [BioC] Combining HGU133A & HGU133B data   Adaikalavan RAMASAMY
• [BioC] Analysis system requirement   Gordon Smyth
• [BioC] installing BioConductor   Nunez-Garcia, Javier
• [BioC] installing BioConductor   michael watson (IAH-C)
• Summary: [BioC] Combining HGU133A & HGU133B data   Adaikalavan RAMASAMY
• [BioC] installing BioConductor   Jeff Gentry
• [BioC] How to Run Bioconductor on a Macintosh?   Markus Matthias Haußner
• [BioC] R/Bioconductor and golub datasets   Hrishi D
• [BioC] Help please! Invalid "phenoData" object   ying chen
• [BioC] Help please! Invalid "phenoData" object   Laurent Buffat
• [BioC] Help please! Invalid "phenoData" object   Laurent Buffat
• [BioC] Please Explain the code from Lab 5: Cluster Analysis and Lab 6: Classification   dibakar ray
• [BioC] Quality checks / flagging   Tan, MinHan
• [BioC] Quality checks / flagging   Yves Bastide
• [BioC] Quality checks / flagging   Yves Bastide
• [BioC] Quality checks / flagging   Yves Bastide
• [BioC] Subsetting in R   michael watson (IAH-C)
• [BioC] difference between hgu95av2probe library and pm matrix   M.Ruschhaupt at dkfz-heidelberg.de
• [BioC] Quality checks / flagging   Gordon Smyth
• [BioC] Subsetting in R   Ramon Diaz-Uriarte
• [BioC] Re: Invalid "phenoData" object   Chris Bye
• [BioC] limma normalization   Jason Skelton
• [BioC] Quality checks / flagging   Gordon Smyth
• [BioC] Quality checks / flagging   Gordon Smyth
• [BioC] Quality checks / flagging   Gordon K Smyth
• [BioC] difference between hgu95av2probe library and pm matrix   Laurent Gautier
• [BioC] difference between hgu95av2probe library and pm matrix   M.Ruschhaupt at dkfz-heidelberg.de
• [BioC] limma normalization   Gordon Smyth
• [BioC] primer design   Fabien Crozet
• [BioC] difference between hgu95av2probe library and pm matrix   Laurent Gautier
• [BioC] Imagene and BioConductor   Nunez-Garcia, Javier
• [BioC] short course announcement   mark at biostat.ucsf.edu
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Imagene and BioConductor   Gordon K Smyth
• [BioC] Web Glitch for reposTools   paul.boutros at utoronto.ca
• [BioC] Problems with hgu133acdf...!   James MacDonald
• [BioC] Gene names in limma Venn Diagrams   James Wettenhall
• [BioC] Error with getBioC() under Mac OS 10.2.6   John Maindonald
• [BioC] (no subject)   Wang, Steven
• [BioC] Problems with hgu133acdf...!   Dario Greco
• [BioC] Help   Dr Narendra K. Kaushik [npm_nmd]
• [BioC] Vsn implementation of spot weights   Tom Price
• [BioC] 64-bit CPUs and bioconductor   Shinichiro Wachi
• [BioC] (no subject)   John Zhang
• [BioC] (no subject)   John Zhang
• [BioC] limma and ArrayVision   alessandro ambrosi
• [BioC] Reading CDC files.   stephen at iwinet.rug.nl
• [BioC][BioCBUG] Boston User's Group Formation query   Vincent Carey 525-2265
• [BioC] Help   Vincent Carey 525-2265
• [BioC] example of working from a database dump   Vincent Carey 525-2265
• [BioC] splitting clusters and cluster significance   Subramanian Karthikeyan
• [BioC] splitting clusters and cluster significance   Robert Gentleman
• [BioC] Vsn implementation of spot weights   w.huber at dkfz-heidelberg.de
• [BioC] ...Logit-t vs RMA...   Dario Greco
• [BioC] 64-bit CPUs and bioconductor   w.huber at dkfz-heidelberg.de
• [BioC] limma and ArrayVision   Gordon K Smyth
• [BioC] splitting clusters and cluster significance   Subramanian Karthikeyan
• [BioC] 64-bit CPUs and bioconductor   David Henderson
• [BioC] Re: Logit-t vs RMA   Eric
• [BioC] help regarding tutorial Lab5 and Lab6   Claire Wilson
• [BioC] limma and ArrayVision   alessandro ambrosi
• [BioC] help regarding tutorial Lab5 and Lab6   dibakar ray
• [BioC] "Environment hgu133acdf is not available" question ...   Richard Finney
• [BioC] RMA/median polish question   James MacDonald
• [BioC] Querying PubMed Database   Christina Kendziorski
• [BioC] RMA/median polish question   James MacDonald
• [BioC] Doc for Bioconductor   Mathieu Drapeau
• [BioC] Doc for Bioconductor   Vincent Carey 525-2265
• [BioC] Querying PubMed Database   Vincent Carey 525-2265
• [BioC] Problem reading .CEL data into R.   Stephen Nyangoma
• [BioC] 64-bit CPUs and bioconductor   Douglas Bates
• [BioC] "Environment hgu133acdf is not available" question ...   Robert Gentleman
• [BioC] RMA/median polish question   Ben Bolstad
• [BioC] Re: Logit-t vs RMA   Rafael A. Irizarry
• [BioC] Problem reading .CEL data into R.   Laurent Gautier
• [BioC] Re: Logit-t vs RMA   Eric
• [BioC] Re: Logit-t vs RMA   Jenny Drnevich
• [BioC] Re: Logit-t vs RMA   Rafael A. Irizarry
• [BioC] Replicate data and p-values   Mike Schaffer
• [BioC] limma and ArrayVision   alessandro ambrosi
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Re: Logit-t vs RMA   Gordon Smyth
• [BioC] limma and ArrayVision   Gordon Smyth
• [BioC] limma and ArrayVision   Gordon Smyth
• [BioC] Swissprot code   Phguardiol at aol.com
• [BioC] Swissprot code   James MacDonald
• [BioC] Swissprot code   Robert Gentleman
• [BioC] affy 1313 and R1.8a on windows XPPro   Phguardiol at aol.com
• [BioC] affy 1313 and R1.8a on windows XPPro   Rafael A. Irizarry
• [BioC] Limma or something else ? plus Normalization question   Phguardiol at aol.com
• [BioC] Re: Logit-t vs RMA   Susan Holmes
• [BioC] "validity" of p-values   Jenny Drnevich
• [BioC] "validity" of p-values   Michael Newton
• [BioC] "validity" of p-values   Rafael A. Irizarry
• [BioC] "validity" of p-values   Justin Borevitz
• [BioC] Allocation error   Ann Hess
• [BioC] Allocation error   James MacDonald
• [BioC] Affymetrix U133A data ?   Richard Finney
• [BioC] Limma or something else ? plus Normalization question   Gordon Smyth
• [BioC] Affymetrix U133A data ?   James MacDonald
• [BioC] Affymetrix U133A data ?   Rafael A. Irizarry
• [BioC] Older devel versions of affy   James MacDonald
• [BioC] normalize help revisted   Rafael A. Irizarry
• [BioC] Re: "validity" of p-values   Gordon Smyth
• [BioC] Rgraphviz and Windows   Stephane DRAY
• [BioC] Rgraphviz and Windows   Jeff Gentry
• [BioC] Limma or something else ? plus Normalization question   Gordon Smyth
• [BioC] GenMAPP swissprot question / answers   Phguardiol at aol.com
• [BioC] Fwd: [base] LCB R-Plugins v 0.92   Lao Saal
• [BioC] comparing hgu133a chips with 3mg total RNA to 1mg total RNA   Dick Beyer
• [BioC] Rgraphviz and Windows   Vincent Carey 525-2265
• [BioC] Affymetrix U133A data ?   Laurent Gautier
• [BioC] limma: read.imagene patch   Yves Bastide
• [BioC] Linear and spline normalization   Stephen Nyangoma
• [BioC] comparing hgu133a chips with 3mg total RNA to 1mg total RNA   Rafael A. Irizarry
• [BioC] Linear and spline normalization   Johannes Freudenberg
• [BioC] Rgraphviz and Windows   Vincent Carey 525-2265
• [BioC] limma: read.imagene patch   Gordon Smyth
• [BioC] Problems with getBioC/R   Stéphanie Mottier
• [BioC] log values of affybatch data   Ann Hess
• [BioC] log values of affybatch data   James MacDonald
• [BioC] p-values for multtest   Ann Hess
• [BioC] log values of affybatch data   Rafael A. Irizarry
• [BioC] log values of affybatch data   Stephen Nyangoma
• [BioC] log values of affybatch data   Ben Bolstad
• [BioC] log values of affybatch data   Johannes Freudenberg

Last message date: Tue Sep 30 23:45:32 MEST 2003
Archived on: Thu Oct 2 17:00:29 MEST 2003

• Messages sorted by: [ thread ] [ subject ] [ author ]
• More info on this list...